Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G272300.1 | Wheat | cytosol, nucleus, plastid | 59.38 | 78.66 |
| TraesCS1D01G125200.2 | Wheat | plastid | 76.82 | 66.79 |
| Os05t0232500-01 | Rice | nucleus, plastid | 64.68 | 62.74 |
| EES17914 | Sorghum | plastid | 63.58 | 62.61 |
| TraesCS3D01G164200.1 | Wheat | nucleus, plastid | 56.07 | 56.32 |
| CDY30673 | Canola | nucleus | 20.75 | 51.93 |
| CDY51802 | Canola | cytosol | 21.63 | 47.8 |
| Bra036393.1-P | Field mustard | cytosol, extracellular | 8.83 | 47.06 |
| TraesCS7D01G206600.1 | Wheat | cytosol | 23.84 | 46.35 |
| TraesCS3D01G164800.2 | Wheat | mitochondrion, nucleus, plastid | 36.42 | 43.65 |
| AT1G53023.1 | Thale cress | cytosol | 30.02 | 43.04 |
| TraesCS4D01G289700.1 | Wheat | cytosol | 21.63 | 42.79 |
| KRH26136 | Soybean | cytosol | 28.26 | 42.11 |
| GSMUA_Achr10P... | Banana | nucleus | 43.93 | 41.81 |
| CDY25884 | Canola | plastid | 30.24 | 41.39 |
| TraesCS3D01G164900.3 | Wheat | nucleus | 33.55 | 41.3 |
| Bra041020.1-P | Field mustard | plastid | 29.8 | 41.03 |
| Bra038095.1-P | Field mustard | cytosol, nucleus, peroxisome | 28.92 | 40.31 |
| KRH58633 | Soybean | cytosol, nucleus | 39.51 | 39.96 |
| CDY25883 | Canola | cytosol | 24.94 | 39.93 |
| Solyc07g053960.2.1 | Tomato | nucleus | 39.74 | 38.88 |
| PGSC0003DMT400047166 | Potato | nucleus | 39.51 | 38.74 |
| KRH42541 | Soybean | nucleus | 39.96 | 38.19 |
| KRH26135 | Soybean | cytosol | 31.35 | 36.5 |
| VIT_12s0028g03630.t01 | Wine grape | nucleus | 38.63 | 34.25 |
| TraesCS1D01G396000.2 | Wheat | cytosol, mitochondrion, nucleus | 41.72 | 33.81 |
| CDX71178 | Canola | cytosol | 31.79 | 33.41 |
| CDX75824 | Canola | cytosol | 34.44 | 33.4 |
| CDX82439 | Canola | cytosol | 33.55 | 33.12 |
| Bra030965.1-P | Field mustard | nucleus | 34.0 | 32.77 |
| TraesCS3D01G269000.1 | Wheat | nucleus | 37.97 | 32.45 |
| CDY55875 | Canola | nucleus | 30.24 | 32.08 |
| CDY47562 | Canola | cytosol | 33.77 | 31.74 |
| CDY02528 | Canola | cytosol | 33.55 | 31.67 |
| Bra001591.1-P | Field mustard | nucleus | 36.64 | 30.8 |
| CDX98552 | Canola | cytosol | 36.64 | 30.51 |
| CDY24125 | Canola | cytosol | 32.67 | 30.45 |
| CDX97660 | Canola | cytosol | 37.09 | 30.43 |
| Bra027252.1-P | Field mustard | cytosol | 36.87 | 30.36 |
| CDY25886 | Canola | cytosol | 31.13 | 30.32 |
| Bra040814.1-P | Field mustard | cytosol | 31.13 | 30.32 |
| Bra019007.1-P | Field mustard | cytosol | 33.11 | 30.18 |
| CDY26018 | Canola | cytosol | 33.55 | 29.92 |
| AT1G53025.2 | Thale cress | nucleus | 36.42 | 29.62 |
| Bra021105.1-P | Field mustard | nucleus | 37.75 | 28.64 |
| CDY20117 | Canola | nucleus | 37.53 | 28.43 |
| AT3G15355.1 | Thale cress | nucleus | 36.2 | 26.93 |
| CDY21838 | Canola | cytosol | 37.31 | 26.04 |
| KRH27240 | Soybean | cytosol | 38.41 | 24.72 |
| Solyc10g007000.2.1 | Tomato | cytosol | 36.2 | 24.59 |
| KRH22096 | Soybean | cytosol | 38.63 | 24.2 |
| VIT_19s0014g02760.t01 | Wine grape | nucleus | 38.85 | 23.47 |
| PGSC0003DMT400039746 | Potato | nucleus | 37.31 | 23.31 |
| PGSC0003DMT400064440 | Potato | nucleus | 36.64 | 22.8 |
| Solyc12g013820.1.1 | Tomato | nucleus | 37.09 | 22.64 |
| KRH55293 | Soybean | cytosol, peroxisome, plastid | 34.0 | 17.72 |
| TraesCS1D01G396300.1 | Wheat | nucleus | 32.01 | 16.98 |
| TraesCS2D01G400600.1 | Wheat | nucleus | 32.45 | 14.7 |
| TraesCS2D01G051900.1 | Wheat | cytosol | 31.13 | 14.37 |
| TraesCS3D01G015300.1 | Wheat | plasma membrane | 30.91 | 13.92 |
| TraesCS3D01G015200.1 | Wheat | cytosol | 30.68 | 13.9 |
| TraesCS2D01G600300.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 29.8 | 13.87 |
| TraesCS3D01G032000.4 | Wheat | nucleus | 31.79 | 12.94 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G272400.1 | EnsemblPlantsGene:TraesCS5D01G272400 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR44273 | PANTHER:PTHR44273:SF3 | PFAM:PF00179 | PFscan:PS50127 | SEG:seg |
| SMART:SM00212 | SUPFAM:SSF54495 | TIGR:cd00195 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5D:-:375440333..375450677
Molecular Weight (calculated)
51046.2 Da
IEP (calculated)
4.617
GRAVY (calculated)
-0.711
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MRHSVPELPK GSSSSDEVGS FTENNSFEAS EAKLQNLDSC EIEEENCYVD DEDEGYYDDE YEGPDYEFDG SDFNQQIDLN QQLEYKFDDL DLPPGVEASV
101: PLLQKAITDD GPGNFKSMSG KEDEFGKKYR FFKQFDTVED FPDHHYAKNP VGKTGKGWTK RIQHDWKLLE NNLPASIYVR VSENRMDLLR AVMIGPQGTP
201: YHDGLFFFDA QFPASYPARP PVLHYQSGGL ELNPNLYASG RVCLSLLGTW RGDDCENWNS AQSTMLQVLI SIQALVLNEK PYFNEPGFET DAKYANGQRR
301: SLEYNDTTFQ NSCRTMLYSL RRPPQHFEDL VAGHFRERGR AILAACKYYM EGNRVGSVVP GEDDEGKELE IVNAQGPSSS DVVKPEKHEG AGRRTASFKA
401: KMEVLFEELL MEFNVKGAHT RKFCAEKLKK SQRDAASSCS SSPADICGGS IIK
101: PLLQKAITDD GPGNFKSMSG KEDEFGKKYR FFKQFDTVED FPDHHYAKNP VGKTGKGWTK RIQHDWKLLE NNLPASIYVR VSENRMDLLR AVMIGPQGTP
201: YHDGLFFFDA QFPASYPARP PVLHYQSGGL ELNPNLYASG RVCLSLLGTW RGDDCENWNS AQSTMLQVLI SIQALVLNEK PYFNEPGFET DAKYANGQRR
301: SLEYNDTTFQ NSCRTMLYSL RRPPQHFEDL VAGHFRERGR AILAACKYYM EGNRVGSVVP GEDDEGKELE IVNAQGPSSS DVVKPEKHEG AGRRTASFKA
401: KMEVLFEELL MEFNVKGAHT RKFCAEKLKK SQRDAASSCS SSPADICGGS IIK
001: MVEIKDSSNV RKLKEEFLRD FKRFDTVEDF SDHHYAAEGS PAKLSLWHLK FKGRPKNWVK DIQKEWKILD KNLPETIFVR ACESRIDLLR AVIIGAEGTP
101: YHDGLFFFDI QFPDTYPSVP PKVHYHSGGL RINPNLYKCG KVCLSLISTW TGKKREKWLP KESTMLQLLV SIQALILNEK PYYNEPGYEK SMGTPLGESY
201: SKDYSENVFV FSLKTMHFEE FVRSHFFVRS HDIVKACNAY KDGAPVGSID KGGVKKQTRQ RGSLKFRINV TSFMKTVVDE FVNLGAIREA NHRGEPNPTL
301: FSCFFFCYLE LIICSV
101: YHDGLFFFDI QFPDTYPSVP PKVHYHSGGL RINPNLYKCG KVCLSLISTW TGKKREKWLP KESTMLQLLV SIQALILNEK PYYNEPGYEK SMGTPLGESY
201: SKDYSENVFV FSLKTMHFEE FVRSHFFVRS HDIVKACNAY KDGAPVGSID KGGVKKQTRQ RGSLKFRINV TSFMKTVVDE FVNLGAIREA NHRGEPNPTL
301: FSCFFFCYLE LIICSV
Arabidopsis Description
UBC39Putative ubiquitin-conjugating enzyme E2 39 [Source:UniProtKB/Swiss-Prot;Acc:F4HPP7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.