Factsheet for Bra021105.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20117	Canola	nucleus	99.16	99.0
Bra001591.1-P	Field mustard	nucleus	70.35	77.92
Bra027252.1-P	Field mustard	cytosol	70.02	76.0
AT3G15355.1	Thale cress	nucleus	62.98	61.74
Bra036393.1-P	Field mustard	cytosol, extracellular	8.71	61.18
HORVU3Hr1G109730.1	Barley	cytosol	16.08	59.63
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	30.82	56.62
Bra041020.1-P	Field mustard	plastid	30.82	55.93
HORVU1Hr1G090980.2	Barley	cytosol	17.59	52.5
GSMUA_Achr7P25120_001	Banana	cytosol	24.96	49.83
Bra019007.1-P	Field mustard	cytosol	40.87	49.09
Bra030965.1-P	Field mustard	nucleus	38.36	48.72
Bra040814.1-P	Field mustard	cytosol	37.19	47.74
Zm00001d009007_P001	Maize	cytosol	19.1	46.53
KRH26136	Soybean	cytosol	23.62	46.38
Os01t0677500-00	Rice	cytosol	26.13	45.22
TraesCS5D01G272300.1	Wheat	cytosol, nucleus, plastid	24.96	43.57
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	14.24	42.08
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	14.24	42.08
HORVU2Hr1G062530.3	Barley	cytosol	9.05	41.54
HORVU5Hr1G000190.3	Barley	cytosol	9.05	41.54
Zm00001d009513_P003	Maize	cytosol	27.3	41.06
KRH26135	Soybean	cytosol	26.47	40.62
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	25.13	39.79
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	25.13	39.68
KXG31477	Sorghum	mitochondrion, plastid	24.46	39.67
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	24.79	39.57
GSMUA_Achr6P22670_001	Banana	cytosol	30.15	39.3
Os09t0294300-01	Rice	nucleus	28.14	38.8
TraesCS3D01G164200.1	Wheat	nucleus, plastid	29.15	38.58
TraesCS3B01G183000.1	Wheat	nucleus, plastid	29.15	38.5
EES17914	Sorghum	plastid	29.48	38.26
Zm00001d039285_P001	Maize	cytosol, plastid	28.81	38.22
TraesCS3A01G156300.1	Wheat	nucleus, plastid	28.98	38.11
TraesCS3A01G157300.2	Wheat	nucleus	23.28	37.87
HORVU3Hr1G031950.4	Barley	mitochondrion	23.28	37.87
Zm00001d039280_P005	Maize	mitochondrion, nucleus, plastid	23.62	37.8
TraesCS5D01G272400.1	Wheat	nucleus	28.64	37.75
TraesCS3D01G164900.3	Wheat	nucleus	23.12	37.5
TraesCS3B01G183800.2	Wheat	nucleus	23.12	37.5
KXG31481	Sorghum	nucleus	28.81	37.47
HORVU3Hr1G031890.10	Barley	cytosol, nucleus	24.96	37.44
Zm00001d047959_P001	Maize	cytosol	13.9	37.22
Os05t0557600-01	Rice	cytosol	31.49	36.94
TraesCS5B01G264000.1	Wheat	nucleus	27.97	36.87
Os05t0232500-01	Rice	nucleus, plastid	28.81	36.83
TraesCS1A01G129500.2	Wheat	nucleus	30.32	36.71
HORVU1Hr1G029800.11	Barley	plastid	29.31	36.69
HORVU3Hr1G031730.4	Barley	nucleus, plastid	29.15	36.25
GSMUA_Achr10P...	Banana	nucleus	28.64	35.92
Zm00001d049101_P001	Maize	cytosol	9.21	35.26
EES19929	Sorghum	nucleus	29.82	35.11
Os01t0232500-01	Rice	nucleus	28.31	34.85
GSMUA_Achr9P00210_001	Banana	plastid	31.32	34.82
TraesCS1B01G146400.2	Wheat	plastid	30.15	34.68
TraesCS1D01G125200.2	Wheat	plastid	30.15	34.55
TraesCS3B01G303300.1	Wheat	nucleus	30.15	33.96
TraesCS3A01G269200.1	Wheat	nucleus	29.82	33.58
TraesCS3D01G269000.1	Wheat	nucleus	29.82	33.58
KXG33109	Sorghum	nucleus	29.65	33.15
TraesCS1B01G415500.2	Wheat	nucleus	30.99	32.98
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	30.82	32.92
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	30.82	32.8
KRH27240	Soybean	cytosol	38.53	32.67
HORVU1Hr1G085630.1	Barley	cytosol, nucleus	31.32	32.3
Solyc10g007000.2.1	Tomato	cytosol	36.01	32.23
Os01t0233900-01	Rice	mitochondrion	24.62	31.61
VIT_19s0014g02760.t01	Wine grape	nucleus	39.36	31.33
KRH22096	Soybean	cytosol	37.86	31.26
HORVU3Hr1G062370.3	Barley	golgi	29.82	30.22
PGSC0003DMT400064440	Potato	nucleus	36.68	30.08
PGSC0003DMT400039746	Potato	nucleus	35.01	28.83
Solyc12g013820.1.1	Tomato	nucleus	35.51	28.57
Os01t0229900-01	Rice	mitochondrion	11.73	25.74
KRH55293	Soybean	cytosol, peroxisome, plastid	31.66	21.75
Bra021874.1-P	Field mustard	nucleus	25.8	17.8
Bra017778.1-P	Field mustard	cytosol	23.95	15.98
Os03t0679300-01	Rice	mitochondrion	3.35	12.05
Bra013040.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	23.12	11.1

Protein Annotations

EnsemblPlants:Bra021105.1	EnsemblPlants:Bra021105.1-P	EnsemblPlantsGene:Bra021105	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF5	PFAM:PF00179	PFscan:PS50127
SEG:seg	SMART:SM00212	SUPFAM:SSF54495	UniParc:UPI0002543F95	UniProt:M4DX59	MapMan:35.1

Description

AT3G15355 (E=1e-177) UBC25, PFU1 | UBC25 (UBIQUITIN-CONJUGATING ENZYME 25); small conjugating protein ligase

Coordinates

chrA01:-:23957055..23959642

Molecular Weight (calculated)

66001.5 Da

IEP (calculated)

4.468

GRAVY (calculated)

-0.600

Length

597 amino acids

Sequence
(BLAST)

001: MEPEIAHPVA SCSATLKTTP PEANGVVNNN NVDSKNKGKA IQLEDDDEQL EGSASDCYDT TNNDESYPGS SPLSNSLLDP DSLIYEDDDD YSDQYGYEME
101: DELEEEEDDG AGDYVSEYQA LFDAKEKDIP AGVEVSMDWL PNSEAAKSSG SGKCSRDEHG IKPEAPSSSS KKATVGSGIH SSWNTLPHNS KGVIPNSAYA
201: LPMKTQIYNY SAHALKFSSS SSDHLEPQTP DTVMGEAPVP APAQASSGLV LPVPNHPPWY KGHKMYPSAR PRVDEVISAQ SCSRVKRNME DYLGKYLFFK
301: KFDIVEDLGD HEYATQGTTT KQHSKEWMKR IQEEWRILEN DLPEMIFVRA YESRMDLMRA VIVGADGTPY HDGLFFFDIY FPDTYPSVPP MVHYQSGGLR
401: INPNLYNCGK VCLSLLGTWS GAPREKWIPN NSTMLQVLVS IQGLILNEKP YFNEPGYERT AGSAGGEAQS KAYSENTFLL SLKTMVYNMR RPPKYFEDFS
501: YGHFFSCAHD VLRACTAYRN GAPVASLVRG KVKEGEESSE RCSEKFSQDV GITVDTLLLK EFILLGVLGL EPEEDKASEI DVAESSNGSP RGGMSSN

Best Arabidopsis Sequence Match ( AT3G15355.1 )
(BLAST)

001: MEPNVVEIAT PPAASCSRIR TPTKAETPEV IDVEEYDLQN GGVPNGNNVD YKNKGKAIDF DSMSYGDYGE EDEYAVGSPG DDYGYPESSP LSNSLLDPES
101: LIYEDDENYS EQYDFEMEAE PDNYSMYQDL FDGKDIPTGV EVSMDWFPNS ADKESASSSK SSHANNGNNS SKKATKASGI HSQFSSDMET PVAQPWNALP
201: HKAEGVIPNS AYALPQNSKA FQPPYAVHYS ALKTAFSNYL QPQTPDTVLG EAPAPAAGSS GLLPPNTPGF KSNAARFKEE PPILPPDDSR VKRNMEDYLG
301: LYLFFKRFDI VEDFSDHHYA SKGTTSKQHS KDWAKRIQDE WRILEKDLPE MIFVRAYESR MDLLRAVIIG AQGTPYHDGL FFFDIFFPDT YPSTPPIVHY
401: HSGGLRINPN LYNCGKVCLS LLGTWSGNQR EKWIPNTSTM LQVLVSIQGL ILNQKPYFNE PGYERSAGSA HGESTSKAYS ENTFILSLKT MVYTMRRPPK
501: YFEDFAYGHF FSCAHDVLKA CNAYRNGATP GYLVKGAPDV EENSAGMSSL KFRTDVATFV ETVLLKEFIL LGVLGLEPEE EEKTPETIIV AESSKCTRSR
601: SKRDRVSSS

Arabidopsis Description

UBC25Probable ubiquitin-conjugating enzyme E2 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.