Factsheet for Zm00001d039280_P005

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	52.01	96.04
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	51.21	94.55
Zm00001d049101_P001	Maize	cytosol	37.0	88.46
Zm00001d047959_P001	Maize	cytosol	52.55	87.89
KXG31477	Sorghum	mitochondrion, plastid	83.65	84.78
HORVU3Hr1G109730.1	Barley	cytosol	33.51	77.64
HORVU1Hr1G090980.2	Barley	cytosol	38.07	71.0
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	68.9	68.72
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	68.9	68.17
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	68.1	67.2
TraesCS3A01G157300.2	Wheat	nucleus	65.42	66.48
TraesCS3B01G183800.2	Wheat	nucleus	64.88	65.76
TraesCS3D01G164900.3	Wheat	nucleus	64.61	65.49
HORVU3Hr1G031950.4	Barley	mitochondrion	63.27	64.31
HORVU2Hr1G062530.3	Barley	cytosol	21.98	63.08
HORVU5Hr1G000190.3	Barley	cytosol	21.45	61.54
HORVU3Hr1G031890.10	Barley	cytosol, nucleus	63.0	59.05
Os01t0233900-01	Rice	mitochondrion	67.02	53.76
CDY30673	Canola	nucleus	24.66	50.83
Bra036393.1-P	Field mustard	cytosol, extracellular	11.53	50.59
Zm00001d009007_P001	Maize	cytosol	31.9	48.57
CDY51802	Canola	cytosol	26.01	47.32
AT1G53023.1	Thale cress	cytosol	37.0	43.67
KRH26136	Soybean	cytosol	32.98	40.46
CDY25883	Canola	cytosol	29.76	39.22
Bra041020.1-P	Field mustard	plastid	34.58	39.21
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	33.78	38.77
CDY25884	Canola	plastid	33.78	38.07
Zm00001d039285_P001	Maize	cytosol, plastid	42.9	35.56
GSMUA_Achr10P...	Banana	nucleus	45.31	35.5
KRH26135	Soybean	cytosol	36.73	35.22
PGSC0003DMT400047166	Potato	nucleus	41.55	33.55
Solyc07g053960.2.1	Tomato	nucleus	41.29	33.26
Zm00001d009513_P003	Maize	cytosol	34.85	32.75
KRH58633	Soybean	cytosol, nucleus	38.87	32.37
CDX71178	Canola	cytosol	36.73	31.79
KRH42541	Soybean	nucleus	39.14	30.8
CDY55875	Canola	nucleus	35.12	30.68
Bra030965.1-P	Field mustard	nucleus	38.34	30.43
CDY02528	Canola	cytosol	38.87	30.21
CDY47562	Canola	cytosol	38.87	30.08
VIT_12s0028g03630.t01	Wine grape	nucleus	41.02	29.94
Bra040814.1-P	Field mustard	cytosol	37.0	29.68
CDY25886	Canola	cytosol	37.0	29.68
CDX82439	Canola	cytosol	36.19	29.41
CDX75824	Canola	cytosol	36.46	29.12
CDY24125	Canola	cytosol	37.0	28.4
Bra019007.1-P	Field mustard	cytosol	36.73	27.57
CDY26018	Canola	cytosol	36.73	26.97
Bra001591.1-P	Field mustard	nucleus	37.8	26.16
Bra027252.1-P	Field mustard	cytosol	38.34	26.0
CDX98552	Canola	cytosol	37.8	25.92
CDX97660	Canola	cytosol	38.34	25.91
AT1G53025.2	Thale cress	nucleus	37.53	25.13
AT3G15355.1	Thale cress	nucleus	39.41	24.14
Bra021105.1-P	Field mustard	nucleus	37.8	23.62
CDY20117	Canola	nucleus	37.8	23.58
Solyc10g007000.2.1	Tomato	cytosol	39.41	22.04
KRH27240	Soybean	cytosol	41.29	21.88
KRH22096	Soybean	cytosol	41.82	21.58
CDY21838	Canola	cytosol	37.53	21.57
VIT_19s0014g02760.t01	Wine grape	nucleus	42.63	21.2
PGSC0003DMT400039746	Potato	nucleus	39.68	20.41
PGSC0003DMT400064440	Potato	nucleus	39.68	20.33
Solyc12g013820.1.1	Tomato	nucleus	38.61	19.41
KRH55293	Soybean	cytosol, peroxisome, plastid	38.34	16.46
Zm00001d040036_P022	Maize	nucleus	38.61	13.1
Zm00001d008520_P001	Maize	nucleus	38.61	13.07
Zm00001d038972_P002	Maize	endoplasmic reticulum, golgi, plastid	38.87	10.07

Protein Annotations

EntrezGene:100194284	Gene3D:3.10.110.10	MapMan:35.1	UniProt:B4FI48	EMBL:BT036786	EMBL:BT068488
InterPro:IPR000608	InterPro:IPR016135	ProteinID:ONM28191.1	ProteinID:ONM28196.1	ProteinID:ONM28197.1	ProteinID:ONM28198.1
ProteinID:ONM28199.1	PFAM:PF00179	PFscan:PS50127	PANTHER:PTHR44273	PANTHER:PTHR44273:SF1	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00017B6FCA	EnsemblPlantsGene:Zm00001d039280	EnsemblPlants:Zm00001d039280_P005
EnsemblPlants:Zm00001d039280_T005	SEG:seg	:	:	:	:

Description

Probable ubiquitin-conjugating enzyme E2 25

Coordinates

chr3:+:971871..975827

Molecular Weight (calculated)

41927.6 Da

IEP (calculated)

8.213

GRAVY (calculated)

-0.420

Length

373 amino acids

Sequence
(BLAST)

001: MALKKLLQLF CVGKKDSKKK GKFIDPLWQA SASRSSVNVT ANKTHLDPCS SGNDTVSVQN HEVESSSTVS SWARTEQGTE IAHHTPFSQF DVVQDFSDHH
101: YAKTSAGKVT KDWVKAIQSE WDLLQKNLPE SIYVRVYEDR TDLLRAAIVG PAGTPYHDGL FFFDVRFPCE YPKCPPKVYY HSGGLRLNPN LYESGKVCLS
201: LLNTWWGKGC EKWGKSSSSM LQVLVSIQGL VLNDRPYFNE PGSKNSAETT GGERCSLAYN QTAFVRSCKT MLYSLRKPPM HFETLVLWHF HEHERAILDA
301: CRAYMSGTVV GSSAGTGSNR RYVHDKCFAE FHKSLTLYTE HLRAEFAANT RRVMELETED EIVPSIAASV KSC

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.