Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G164900.3 | Wheat | nucleus | 95.65 | 95.65 |
| HORVU3Hr1G031950.4 | Barley | mitochondrion | 94.02 | 94.28 |
| TraesCS3A01G157300.2 | Wheat | nucleus | 93.75 | 94.01 |
| TraesCS3B01G183600.1 | Wheat | mitochondrion, nucleus | 79.89 | 77.98 |
| KXG31477 | Sorghum | mitochondrion, plastid | 68.48 | 68.48 |
| Zm00001d039280_P005 | Maize | mitochondrion, nucleus, plastid | 65.76 | 64.88 |
| Zm00001d051483_P001 | Maize | mitochondrion, nucleus, peroxisome | 33.7 | 61.39 |
| Zm00001d015028_P001 | Maize | cytosol, mitochondrion, nucleus | 32.88 | 59.9 |
| Zm00001d047959_P001 | Maize | cytosol | 34.78 | 57.4 |
| Os01t0233900-01 | Rice | mitochondrion | 69.84 | 55.27 |
| Zm00001d049101_P001 | Maize | cytosol | 23.37 | 55.13 |
| CDY30673 | Canola | nucleus | 24.46 | 49.72 |
| CDY51802 | Canola | cytosol | 26.9 | 48.29 |
| Bra036393.1-P | Field mustard | cytosol, extracellular | 10.6 | 45.88 |
| TraesCS7B01G110500.1 | Wheat | cytosol, plastid, vacuole | 28.8 | 45.49 |
| TraesCS3B01G029300.1 | Wheat | peroxisome | 25.0 | 42.79 |
| AT1G53023.1 | Thale cress | cytosol | 35.6 | 41.46 |
| CDY25883 | Canola | cytosol | 30.98 | 40.28 |
| KRH26136 | Soybean | cytosol | 33.15 | 40.13 |
| Bra038095.1-P | Field mustard | cytosol, nucleus, peroxisome | 34.51 | 39.08 |
| Bra041020.1-P | Field mustard | plastid | 34.24 | 38.3 |
| CDY25884 | Canola | plastid | 33.7 | 37.46 |
| KRH26135 | Soybean | cytosol | 38.04 | 35.99 |
| GSMUA_Achr10P... | Banana | nucleus | 43.21 | 33.4 |
| TraesCS3B01G183000.1 | Wheat | nucleus, plastid | 40.76 | 33.19 |
| KRH58633 | Soybean | cytosol, nucleus | 39.95 | 32.81 |
| PGSC0003DMT400047166 | Potato | nucleus | 41.03 | 32.68 |
| TraesCS5B01G264000.1 | Wheat | nucleus | 39.95 | 32.45 |
| Solyc07g053960.2.1 | Tomato | nucleus | 40.49 | 32.18 |
| KRH42541 | Soybean | nucleus | 40.76 | 31.65 |
| TraesCS3B01G303300.1 | Wheat | nucleus | 45.38 | 31.51 |
| CDY55875 | Canola | nucleus | 36.14 | 31.15 |
| TraesCS1B01G415500.2 | Wheat | nucleus | 46.47 | 30.48 |
| Bra030965.1-P | Field mustard | nucleus | 38.32 | 30.0 |
| CDX71178 | Canola | cytosol | 35.05 | 29.93 |
| VIT_12s0028g03630.t01 | Wine grape | nucleus | 41.3 | 29.75 |
| TraesCS1B01G146400.2 | Wheat | plastid | 41.58 | 29.48 |
| CDY25886 | Canola | cytosol | 37.23 | 29.46 |
| Bra040814.1-P | Field mustard | cytosol | 37.23 | 29.46 |
| CDY02528 | Canola | cytosol | 38.32 | 29.38 |
| CDY47562 | Canola | cytosol | 38.32 | 29.25 |
| CDY24125 | Canola | cytosol | 37.77 | 28.6 |
| CDX75824 | Canola | cytosol | 35.6 | 28.05 |
| CDX82439 | Canola | cytosol | 34.78 | 27.89 |
| Bra019007.1-P | Field mustard | cytosol | 37.23 | 27.57 |
| CDY26018 | Canola | cytosol | 36.96 | 26.77 |
| CDX98552 | Canola | cytosol | 38.59 | 26.1 |
| CDX97660 | Canola | cytosol | 38.32 | 25.54 |
| Bra027252.1-P | Field mustard | cytosol | 38.04 | 25.45 |
| Bra001591.1-P | Field mustard | nucleus | 37.23 | 25.42 |
| AT1G53025.2 | Thale cress | nucleus | 37.77 | 24.96 |
| AT3G15355.1 | Thale cress | nucleus | 38.32 | 23.15 |
| Bra021105.1-P | Field mustard | nucleus | 37.5 | 23.12 |
| CDY20117 | Canola | nucleus | 37.5 | 23.08 |
| KRH27240 | Soybean | cytosol | 41.58 | 21.73 |
| KRH22096 | Soybean | cytosol | 42.39 | 21.58 |
| Solyc10g007000.2.1 | Tomato | cytosol | 38.86 | 21.44 |
| CDY21838 | Canola | cytosol | 37.23 | 21.11 |
| VIT_19s0014g02760.t01 | Wine grape | nucleus | 42.66 | 20.93 |
| PGSC0003DMT400064440 | Potato | nucleus | 38.59 | 19.51 |
| PGSC0003DMT400039746 | Potato | nucleus | 38.04 | 19.31 |
| Solyc12g013820.1.1 | Tomato | nucleus | 37.77 | 18.73 |
| TraesCS1B01G415800.1 | Wheat | cytosol | 40.22 | 17.54 |
| KRH55293 | Soybean | cytosol, peroxisome, plastid | 41.3 | 17.49 |
| TraesCS3B01G029100.1 | Wheat | cytosol, nucleus, plasma membrane | 36.68 | 13.6 |
| TraesCS5B01G359000.1 | Wheat | cytosol | 32.88 | 13.55 |
| TraesCS2B01G421500.1 | Wheat | golgi, mitochondrion, plasma membrane | 35.33 | 13.35 |
| TraesCS3B01G029000.1 | Wheat | cytosol, nucleus, plasma membrane | 35.87 | 13.33 |
| TraesCS2B01G461900.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane, plastid | 35.33 | 12.55 |
| TraesCS2B01G596800.1 | Wheat | cytosol | 30.98 | 12.22 |
| TraesCS3B01G034500.5 | Wheat | nucleus | 36.68 | 12.12 |
| TraesCS2B01G590500.1 | Wheat | cytosol | 8.42 | 5.06 |
| TraesCS2B01G590700.1 | Wheat | cytosol | 8.15 | 4.62 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G183800.2 | EnsemblPlantsGene:TraesCS3B01G183800 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR44273 | PANTHER:PTHR44273:SF1 | PFAM:PF00179 | PFscan:PS50127 | SEG:seg |
| SMART:SM00212 | SUPFAM:SSF54495 | TIGR:cd00195 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr3B:-:195098626..195103081
Molecular Weight (calculated)
41011.4 Da
IEP (calculated)
9.480
GRAVY (calculated)
-0.377
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLSKLLQLF GVGKKKKKKD SKKKGKSINP VSQGAAPHST LNILASNSLL DPCSSGAGTV LSVPKDEPEC SSNISSMIKE GHGSENEDHK SFNQFDVVQD
101: YSDHHYAKTS PGKTTKDWAK AIQNEWKLLQ RDLPETIYVR VYEDRIDLIR AAIVGPAGTP YHDGLFFFDV CFPPEYPRCP PKVHFHSSGL RLNPNLYESG
201: KVCLSLLNTW LGSGSEKWGK SNSTMLQVLV SIQGLVLNDK PYFNEPVIFS SKEKHSLGYN QTAFVLTCKL MLYLLQKPPK HFETLIVCHF HERERAILEA
301: CRAYGSGMVV GSSVKDGRTY LRNKCFAGFK KSLDAQAELL AKELAANRLR ELQLKRVVPA ADKTMSTS
101: YSDHHYAKTS PGKTTKDWAK AIQNEWKLLQ RDLPETIYVR VYEDRIDLIR AAIVGPAGTP YHDGLFFFDV CFPPEYPRCP PKVHFHSSGL RLNPNLYESG
201: KVCLSLLNTW LGSGSEKWGK SNSTMLQVLV SIQGLVLNDK PYFNEPVIFS SKEKHSLGYN QTAFVLTCKL MLYLLQKPPK HFETLIVCHF HERERAILEA
301: CRAYGSGMVV GSSVKDGRTY LRNKCFAGFK KSLDAQAELL AKELAANRLR ELQLKRVVPA ADKTMSTS
001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR
Arabidopsis Description
Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.