Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30673 | Canola | nucleus | 39.87 | 69.61 |
| Bra036393.1-P | Field mustard | cytosol, extracellular | 17.72 | 65.88 |
| Bra038095.1-P | Field mustard | cytosol, nucleus, peroxisome | 60.44 | 58.77 |
| Bra041020.1-P | Field mustard | plastid | 61.08 | 58.66 |
| CDY51802 | Canola | cytosol | 37.66 | 58.05 |
| CDY25883 | Canola | cytosol | 51.27 | 57.24 |
| CDY25884 | Canola | plastid | 59.49 | 56.8 |
| HORVU3Hr1G109730.1 | Barley | cytosol | 27.85 | 54.66 |
| HORVU1Hr1G090980.2 | Barley | cytosol | 32.59 | 51.5 |
| CDX71178 | Canola | cytosol | 64.87 | 47.56 |
| CDY55875 | Canola | nucleus | 62.66 | 46.37 |
| Bra030965.1-P | Field mustard | nucleus | 67.72 | 45.53 |
| GSMUA_Achr7P25120_001 | Banana | cytosol | 43.04 | 45.48 |
| CDY47562 | Canola | cytosol | 68.04 | 44.61 |
| CDY02528 | Canola | cytosol | 67.41 | 44.38 |
| CDY25886 | Canola | cytosol | 64.87 | 44.09 |
| Bra040814.1-P | Field mustard | cytosol | 64.87 | 44.09 |
| CDY24125 | Canola | cytosol | 67.72 | 44.03 |
| KRH26136 | Soybean | cytosol | 42.09 | 43.75 |
| Zm00001d009007_P001 | Maize | cytosol | 33.54 | 43.27 |
| Bra019007.1-P | Field mustard | cytosol | 66.77 | 42.45 |
| CDY26018 | Canola | cytosol | 67.41 | 41.93 |
| Zm00001d051483_P001 | Maize | mitochondrion, nucleus, peroxisome | 26.27 | 41.09 |
| Os01t0677500-00 | Rice | cytosol | 44.3 | 40.58 |
| Zm00001d015028_P001 | Maize | cytosol, mitochondrion, nucleus | 25.63 | 40.1 |
| TraesCS5D01G272300.1 | Wheat | cytosol, nucleus, plastid | 42.41 | 39.18 |
| AT1G53025.2 | Thale cress | nucleus | 68.99 | 39.14 |
| KXG31477 | Sorghum | mitochondrion, plastid | 44.94 | 38.59 |
| HORVU2Hr1G062530.3 | Barley | cytosol | 15.82 | 38.46 |
| KRH26135 | Soybean | cytosol | 46.84 | 38.05 |
| Zm00001d039280_P005 | Maize | mitochondrion, nucleus, plastid | 43.67 | 37.0 |
| HORVU5Hr1G000190.3 | Barley | cytosol | 15.19 | 36.92 |
| TraesCS3B01G183600.1 | Wheat | mitochondrion, nucleus | 43.99 | 36.87 |
| TraesCS3A01G157200.1 | Wheat | mitochondrion, nucleus, plastid | 43.35 | 36.63 |
| TraesCS3D01G164800.2 | Wheat | mitochondrion, nucleus, plastid | 43.35 | 36.24 |
| HORVU3Hr1G031950.4 | Barley | mitochondrion | 41.46 | 35.69 |
| TraesCS3B01G183800.2 | Wheat | nucleus | 41.46 | 35.6 |
| Zm00001d047959_P001 | Maize | cytosol | 25.0 | 35.43 |
| TraesCS3D01G164900.3 | Wheat | nucleus | 41.14 | 35.33 |
| TraesCS3A01G157300.2 | Wheat | nucleus | 40.82 | 35.15 |
| HORVU3Hr1G031890.10 | Barley | cytosol, nucleus | 43.99 | 34.92 |
| Os09t0294300-01 | Rice | nucleus | 44.62 | 32.56 |
| Zm00001d049101_P001 | Maize | cytosol | 15.82 | 32.05 |
| Zm00001d009513_P003 | Maize | cytosol | 39.24 | 31.23 |
| TraesCS3D01G164200.1 | Wheat | nucleus, plastid | 44.3 | 31.04 |
| Zm00001d039285_P001 | Maize | cytosol, plastid | 43.99 | 30.89 |
| TraesCS3A01G156300.1 | Wheat | nucleus, plastid | 44.3 | 30.84 |
| TraesCS3B01G183000.1 | Wheat | nucleus, plastid | 43.67 | 30.53 |
| GSMUA_Achr10P... | Banana | nucleus | 45.89 | 30.46 |
| EES17914 | Sorghum | plastid | 44.3 | 30.43 |
| GSMUA_Achr6P22670_001 | Banana | cytosol | 43.99 | 30.35 |
| Os01t0233900-01 | Rice | mitochondrion | 44.62 | 30.32 |
| KXG31481 | Sorghum | nucleus | 43.67 | 30.07 |
| AT3G15355.1 | Thale cress | nucleus | 57.91 | 30.05 |
| TraesCS5D01G272400.1 | Wheat | nucleus | 43.04 | 30.02 |
| TraesCS5B01G264000.1 | Wheat | nucleus | 43.04 | 30.02 |
| Os05t0232500-01 | Rice | nucleus, plastid | 43.99 | 29.76 |
| Os01t0232500-01 | Rice | nucleus | 44.94 | 29.28 |
| Os05t0557600-01 | Rice | cytosol | 46.2 | 28.68 |
| HORVU3Hr1G031730.4 | Barley | nucleus, plastid | 43.35 | 28.54 |
| HORVU1Hr1G029800.11 | Barley | plastid | 43.04 | 28.51 |
| EES19929 | Sorghum | nucleus | 45.57 | 28.4 |
| TraesCS1A01G129500.2 | Wheat | nucleus | 43.99 | 28.19 |
| TraesCS3D01G269000.1 | Wheat | nucleus | 46.84 | 27.92 |
| TraesCS3B01G303300.1 | Wheat | nucleus | 46.84 | 27.92 |
| TraesCS3A01G269200.1 | Wheat | nucleus | 46.2 | 27.55 |
| GSMUA_Achr9P00210_001 | Banana | plastid | 46.52 | 27.37 |
| KXG33109 | Sorghum | nucleus | 45.25 | 26.78 |
| TraesCS1B01G146400.2 | Wheat | plastid | 43.67 | 26.59 |
| TraesCS1D01G125200.2 | Wheat | plastid | 43.67 | 26.49 |
| TraesCS1D01G396000.2 | Wheat | cytosol, mitochondrion, nucleus | 45.89 | 25.94 |
| TraesCS1B01G415500.2 | Wheat | nucleus | 45.89 | 25.85 |
| TraesCS1A01G388000.1 | Wheat | cytosol, mitochondrion, nucleus | 45.57 | 25.67 |
| HORVU1Hr1G085630.1 | Barley | cytosol, nucleus | 45.89 | 25.04 |
| HORVU3Hr1G062370.3 | Barley | golgi | 46.52 | 24.96 |
| Os01t0229900-01 | Rice | mitochondrion | 21.2 | 24.63 |
| Solyc10g007000.2.1 | Tomato | cytosol | 51.27 | 24.29 |
| KRH27240 | Soybean | cytosol | 51.58 | 23.15 |
| PGSC0003DMT400064440 | Potato | nucleus | 51.58 | 22.39 |
| KRH22096 | Soybean | cytosol | 50.95 | 22.27 |
| VIT_19s0014g02760.t01 | Wine grape | nucleus | 50.95 | 21.47 |
| PGSC0003DMT400039746 | Potato | nucleus | 48.1 | 20.97 |
| Solyc12g013820.1.1 | Tomato | nucleus | 48.42 | 20.62 |
| KRH55293 | Soybean | cytosol, peroxisome, plastid | 48.73 | 17.72 |
| AT2G33770.1 | Thale cress | nucleus | 42.09 | 14.66 |
| AT2G16920.1 | Thale cress | nucleus | 41.46 | 11.89 |
| Os03t0679300-01 | Rice | mitochondrion | 5.7 | 10.84 |
Protein Annotations
| EntrezGene:10723074 | Gene3D:3.10.110.10 | MapMan:35.1 | ProteinID:AAG52279.1 | ProteinID:AEE32877.1 | ArrayExpress:AT1G53023 |
| EnsemblPlantsGene:AT1G53023 | RefSeq:AT1G53023 | TAIR:AT1G53023 | RefSeq:AT1G53023-TAIR-G | EnsemblPlants:AT1G53023.1 | TAIR:AT1G53023.1 |
| Unigene:At.75550 | UniProt:F4HPP7 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0031625 | GO:GO:0061630 | InterPro:IPR000608 | InterPro:IPR016135 | RefSeq:NP_001185206.1 |
| PFAM:PF00179 | PFscan:PS50127 | PANTHER:PTHR44273 | PANTHER:PTHR44273:SF4 | SMART:SM00212 | SUPFAM:SSF54495 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0001E92C17 | : | : | : |
Description
UBC39Putative ubiquitin-conjugating enzyme E2 39 [Source:UniProtKB/Swiss-Prot;Acc:F4HPP7]
Coordinates
chr1:-:19754214..19755843
Molecular Weight (calculated)
36489.9 Da
IEP (calculated)
9.098
GRAVY (calculated)
-0.358
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEIKDSSNV RKLKEEFLRD FKRFDTVEDF SDHHYAAEGS PAKLSLWHLK FKGRPKNWVK DIQKEWKILD KNLPETIFVR ACESRIDLLR AVIIGAEGTP
101: YHDGLFFFDI QFPDTYPSVP PKVHYHSGGL RINPNLYKCG KVCLSLISTW TGKKREKWLP KESTMLQLLV SIQALILNEK PYYNEPGYEK SMGTPLGESY
201: SKDYSENVFV FSLKTMHFEE FVRSHFFVRS HDIVKACNAY KDGAPVGSID KGGVKKQTRQ RGSLKFRINV TSFMKTVVDE FVNLGAIREA NHRGEPNPTL
301: FSCFFFCYLE LIICSV
101: YHDGLFFFDI QFPDTYPSVP PKVHYHSGGL RINPNLYKCG KVCLSLISTW TGKKREKWLP KESTMLQLLV SIQALILNEK PYYNEPGYEK SMGTPLGESY
201: SKDYSENVFV FSLKTMHFEE FVRSHFFVRS HDIVKACNAY KDGAPVGSID KGGVKKQTRQ RGSLKFRINV TSFMKTVVDE FVNLGAIREA NHRGEPNPTL
301: FSCFFFCYLE LIICSV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.