Factsheet for TraesCS3A01G156300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G183000.1	Wheat	nucleus, plastid	98.24	98.67
TraesCS3D01G164200.1	Wheat	nucleus, plastid	97.58	98.23
HORVU3Hr1G031730.4	Barley	nucleus, plastid	92.95	87.92
Zm00001d009007_P001	Maize	cytosol	39.21	72.65
Zm00001d039285_P001	Maize	cytosol, plastid	66.08	66.67
KXG31481	Sorghum	nucleus	66.52	65.8
Os01t0232500-01	Rice	nucleus	68.5	64.12
TraesCS1A01G129500.2	Wheat	nucleus	65.64	60.45
CDY30673	Canola	nucleus	22.25	55.8
CDY51802	Canola	cytosol	24.01	53.17
Bra036393.1-P	Field mustard	cytosol, extracellular	9.25	49.41
KRH26136	Soybean	cytosol	31.28	46.71
TraesCS3A01G030200.1	Wheat	endoplasmic reticulum	21.59	45.58
CDY25883	Canola	cytosol	27.97	44.88
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	36.78	44.65
TraesCS2A01G441700.1	Wheat	cytosol	24.45	44.58
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	31.72	44.31
AT1G53023.1	Thale cress	cytosol	30.84	44.3
Bra041020.1-P	Field mustard	plastid	31.28	43.16
GSMUA_Achr10P...	Banana	nucleus	44.93	42.86
CDY25884	Canola	plastid	31.06	42.6
TraesCS3A01G157300.2	Wheat	nucleus	33.48	41.42
KRH58633	Soybean	cytosol, nucleus	40.31	40.85
KRH26135	Soybean	cytosol	34.58	40.36
PGSC0003DMT400047166	Potato	nucleus	40.75	40.04
Solyc07g053960.2.1	Tomato	nucleus	40.53	39.74
KRH42541	Soybean	nucleus	40.53	38.82
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	46.7	37.79
VIT_12s0028g03630.t01	Wine grape	nucleus	39.87	35.42
CDY55875	Canola	nucleus	32.82	34.89
CDX71178	Canola	cytosol	33.04	34.8
TraesCS3A01G269200.1	Wheat	nucleus	40.53	34.72
CDX82439	Canola	cytosol	34.36	33.99
Bra030965.1-P	Field mustard	nucleus	34.8	33.62
CDX75824	Canola	cytosol	34.14	33.19
CDY02528	Canola	cytosol	34.58	32.71
Bra040814.1-P	Field mustard	cytosol	33.26	32.47
CDY25886	Canola	cytosol	33.26	32.47
CDY47562	Canola	cytosol	34.14	32.16
CDX98552	Canola	cytosol	38.11	31.8
CDY24125	Canola	cytosol	33.7	31.48
Bra027252.1-P	Field mustard	cytosol	38.11	31.45
Bra001591.1-P	Field mustard	nucleus	37.0	31.17
CDX97660	Canola	cytosol	37.89	31.16
Bra019007.1-P	Field mustard	cytosol	33.92	30.99
CDY26018	Canola	cytosol	34.14	30.51
AT1G53025.2	Thale cress	nucleus	36.56	29.8
Bra021105.1-P	Field mustard	nucleus	38.11	28.98
CDY20117	Canola	nucleus	37.67	28.6
AT3G15355.1	Thale cress	nucleus	38.33	28.57
Solyc10g007000.2.1	Tomato	cytosol	40.53	27.59
KRH27240	Soybean	cytosol	41.63	26.85
CDY21838	Canola	cytosol	38.33	26.81
KRH22096	Soybean	cytosol	42.07	26.42
PGSC0003DMT400064440	Potato	nucleus	40.97	25.55
VIT_19s0014g02760.t01	Wine grape	nucleus	40.53	24.53
PGSC0003DMT400039746	Potato	nucleus	38.55	24.14
Solyc12g013820.1.1	Tomato	nucleus	38.11	23.32
KRH55293	Soybean	cytosol, peroxisome, plastid	36.56	19.1
TraesCS1A01G388400.1	Wheat	cytosol	33.92	18.27
TraesCS3A01G030400.1	Wheat	plasma membrane	31.94	14.54
TraesCS3A01G031600.1	Wheat	cytosol	31.06	14.14
TraesCS2A01G586300.1	Wheat	nucleus	30.18	14.08
TraesCS2A01G403400.1	Wheat	cytosol	30.62	14.03
TraesCS3A01G047700.3	Wheat	nucleus	32.6	13.3

Protein Annotations

EnsemblPlants:TraesCS3A01G156300.1	EnsemblPlantsGene:TraesCS3A01G156300	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF7	PFAM:PF00179	PFscan:PS50127	SEG:seg
SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3A:+:151314477..151318849

Molecular Weight (calculated)

50937.5 Da

IEP (calculated)

4.508

GRAVY (calculated)

-0.744

Length

454 amino acids

Sequence
(BLAST)

001: MDTECRGPQQ GGSSCWATGA AAWSSSQQKR QRCEGSSSDQ VGSSTSASVQ MSESELPDTD YVENEEEDYY MDDDDDCDDE NGNDSEYEFD EADFNQQLAD
101: KFDDLDLPPG VEATVPWLQK LAANDEQDGA SDELVEDEIT RKYKAFQQFY TVQNFSDHHY ANKSVGKTSR EWAKRIQHDW KLLEKDLPAS IFVRVAEDRM
201: DLLRAAIIGP KGTPYHDGLF FFDAHFTSNY PSEPPLVYYH SGGLRLNPNL YNCGKVCLSL LGTWSGSGCE KWNSAHSTML QVLVSIQALI LNEKPYFNEP
301: GYAGSANTTT GQQHSVEYNK TTFLHSCRTM LYSLRRPPEH FGDLVAGHFR ERGRTILAAC KHYLEGNMVG SEVPEEEEAE YDGTGASSSS SSSRSSSSVP
401: KKQEVMRVDP LGRRTQFTDN LKTLFEDLLM EFNVKGADTR KFLEDKVKKN LPAA

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.