Factsheet for TraesCS3A01G157200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	97.33	96.55
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	96.79	95.77
HORVU3Hr1G109730.1	Barley	cytosol	38.77	90.06
HORVU1Hr1G090980.2	Barley	cytosol	47.06	88.0
HORVU3Hr1G031890.10	Barley	cytosol, nucleus	89.3	83.92
HORVU2Hr1G062530.3	Barley	cytosol	28.61	82.31
HORVU5Hr1G000190.3	Barley	cytosol	28.07	80.77
TraesCS3A01G157300.2	Wheat	nucleus	77.81	79.29
KXG31477	Sorghum	mitochondrion, plastid	71.12	72.28
Zm00001d039280_P005	Maize	mitochondrion, nucleus, plastid	68.72	68.9
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	37.17	68.81
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	36.63	67.82
Zm00001d047959_P001	Maize	cytosol	37.7	63.23
Zm00001d049101_P001	Maize	cytosol	25.4	60.9
Os01t0233900-01	Rice	mitochondrion	71.12	57.2
CDY30673	Canola	nucleus	25.94	53.59
Bra036393.1-P	Field mustard	cytosol, extracellular	12.03	52.94
TraesCS3A01G030200.1	Wheat	endoplasmic reticulum	28.61	49.77
CDY51802	Canola	cytosol	25.94	47.32
TraesCS2A01G441700.1	Wheat	cytosol	31.28	46.99
AT1G53023.1	Thale cress	cytosol	36.63	43.35
KRH26136	Soybean	cytosol	35.03	43.09
CDY25883	Canola	cytosol	30.75	40.64
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	35.29	40.62
Bra041020.1-P	Field mustard	plastid	35.29	40.12
CDY25884	Canola	plastid	34.22	38.67
KRH26135	Soybean	cytosol	39.04	37.53
TraesCS3A01G156300.1	Wheat	nucleus, plastid	44.65	36.78
GSMUA_Achr10P...	Banana	nucleus	44.38	34.87
TraesCS1A01G129500.2	Wheat	nucleus	44.92	34.08
PGSC0003DMT400047166	Potato	nucleus	41.98	33.98
TraesCS3A01G269200.1	Wheat	nucleus	48.13	33.96
Solyc07g053960.2.1	Tomato	nucleus	41.71	33.69
KRH58633	Soybean	cytosol, nucleus	40.11	33.48
CDY55875	Canola	nucleus	37.7	33.02
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	48.66	32.44
KRH42541	Soybean	nucleus	40.64	32.07
CDX71178	Canola	cytosol	36.63	31.79
Bra030965.1-P	Field mustard	nucleus	39.84	31.7
Bra040814.1-P	Field mustard	cytosol	39.04	31.4
CDY25886	Canola	cytosol	39.04	31.4
CDY02528	Canola	cytosol	40.11	31.25
CDY47562	Canola	cytosol	40.11	31.12
VIT_12s0028g03630.t01	Wine grape	nucleus	41.98	30.72
CDY24125	Canola	cytosol	39.04	30.04
CDX75824	Canola	cytosol	37.17	29.76
CDX82439	Canola	cytosol	36.36	29.63
Bra019007.1-P	Field mustard	cytosol	38.77	29.18
CDY26018	Canola	cytosol	38.77	28.54
CDX98552	Canola	cytosol	40.91	28.12
CDX97660	Canola	cytosol	41.18	27.9
Bra027252.1-P	Field mustard	cytosol	40.91	27.82
Bra001591.1-P	Field mustard	nucleus	39.3	27.27
AT1G53025.2	Thale cress	nucleus	39.04	26.21
Bra021105.1-P	Field mustard	nucleus	39.57	24.79
CDY20117	Canola	nucleus	39.57	24.75
AT3G15355.1	Thale cress	nucleus	39.04	23.97
CDY21838	Canola	cytosol	39.3	22.65
Solyc10g007000.2.1	Tomato	cytosol	40.11	22.49
KRH27240	Soybean	cytosol	42.25	22.44
KRH22096	Soybean	cytosol	43.05	22.27
VIT_19s0014g02760.t01	Wine grape	nucleus	43.32	21.6
PGSC0003DMT400064440	Potato	nucleus	39.84	20.47
PGSC0003DMT400039746	Potato	nucleus	39.3	20.28
Solyc12g013820.1.1	Tomato	nucleus	39.04	19.68
TraesCS1A01G388400.1	Wheat	cytosol	41.71	18.51
KRH55293	Soybean	cytosol, peroxisome, plastid	41.18	17.72
TraesCS2A01G403400.1	Wheat	cytosol	36.9	13.93
TraesCS2A01G586300.1	Wheat	nucleus	36.1	13.87
TraesCS3A01G030400.1	Wheat	plasma membrane	36.63	13.74
TraesCS3A01G031600.1	Wheat	cytosol	36.36	13.64
TraesCS3A01G047700.3	Wheat	nucleus	39.04	13.12

Protein Annotations

EnsemblPlants:TraesCS3A01G157200.1	EnsemblPlantsGene:TraesCS3A01G157200	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF1	PFAM:PF00179	PFscan:PS50127	SEG:seg
SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3A:-:154033225..154037792

Molecular Weight (calculated)

41572.5 Da

IEP (calculated)

8.981

GRAVY (calculated)

-0.415

Length

374 amino acids

Sequence
(BLAST)

001: MVLKKLLQFF GVGKKKKKNS NKKGKSIDPL WQGASAAPHS TVNVLASNIL LNPCSSGSGN VLSLQKHEPE CSSNISSAIK AVDGSENEDH KLFNQFDVVQ
101: DYSDHHYAKT STGKTSKDWT KTIQNEWKLL QRDLPGSIYV RVYEDRIDLL RAAIVGPSGT PYHDGLFFFD VRFPPEYPRC PPKVYYHSGG LRLNPNLYES
201: GKVCLSLLNT WWGSGCEKWS KSNSTMLQVL ISIQGLVLND KPYFNEPGYK NTVNTPLGEK HSMAYNQTAF VLSCKTMLYS LRKPPMHFET LVVHHFHERE
301: RAILDACSAY ASGIIVGSSV RDGAKYACDK CFAGFKKSLD AHTELLAKEL AKNRAQALEL KGDTPAADEI ASTS

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.