Factsheet for TraesCS1A01G388000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	97.5	97.85
TraesCS1B01G415500.2	Wheat	nucleus	96.79	96.79
HORVU1Hr1G085630.1	Barley	cytosol, nucleus	89.13	86.36
Os05t0557600-01	Rice	cytosol	70.41	77.6
GSMUA_Achr7P25120_001	Banana	cytosol	34.94	65.55
GSMUA_Achr9P00210_001	Banana	plastid	57.75	60.34
GSMUA_Achr6P22670_001	Banana	cytosol	49.2	60.26
Zm00001d009513_P003	Maize	cytosol	42.25	59.7
TraesCS3A01G269200.1	Wheat	nucleus	56.33	59.62
EES19929	Sorghum	nucleus	52.76	58.38
CDY30673	Canola	nucleus	18.36	56.91
CDY51802	Canola	cytosol	19.96	54.63
Bra036393.1-P	Field mustard	cytosol, extracellular	8.2	54.12
KRH26136	Soybean	cytosol	28.34	52.3
TraesCS3A01G030200.1	Wheat	endoplasmic reticulum	19.43	50.7
TraesCS2A01G441700.1	Wheat	cytosol	21.93	49.4
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	32.44	48.66
CDY25883	Canola	cytosol	23.71	47.0
TraesCS3A01G156300.1	Wheat	nucleus, plastid	37.79	46.7
TraesCS3A01G157300.2	Wheat	nucleus	30.48	46.59
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	26.92	46.46
AT1G53023.1	Thale cress	cytosol	25.67	45.57
KRH26135	Soybean	cytosol	30.66	44.22
Bra041020.1-P	Field mustard	plastid	25.67	43.77
TraesCS1A01G129500.2	Wheat	nucleus	36.54	41.58
CDY25884	Canola	plastid	24.42	41.39
Solyc07g053960.2.1	Tomato	nucleus	33.87	41.04
PGSC0003DMT400047166	Potato	nucleus	33.69	40.91
KRH58633	Soybean	cytosol, nucleus	32.62	40.85
VIT_12s0028g03630.t01	Wine grape	nucleus	37.08	40.7
KRH42541	Soybean	nucleus	33.69	39.87
CDX71178	Canola	cytosol	30.3	39.44
CDY55875	Canola	nucleus	29.06	38.17
Bra030965.1-P	Field mustard	nucleus	31.37	37.45
CDY02528	Canola	cytosol	31.37	36.67
CDY47562	Canola	cytosol	31.37	36.51
CDX75824	Canola	cytosol	29.95	35.97
CDY24125	Canola	cytosol	31.02	35.8
Bra040814.1-P	Field mustard	cytosol	29.59	35.7
CDY25886	Canola	cytosol	29.59	35.7
CDX82439	Canola	cytosol	29.06	35.51
CDY26018	Canola	cytosol	31.73	35.04
Bra019007.1-P	Field mustard	cytosol	31.02	35.01
Solyc10g007000.2.1	Tomato	cytosol	39.57	33.28
Bra001591.1-P	Field mustard	nucleus	31.55	32.84
CDX98552	Canola	cytosol	31.73	32.72
Bra027252.1-P	Field mustard	cytosol	31.73	32.36
CDX97660	Canola	cytosol	31.73	32.25
AT1G53025.2	Thale cress	nucleus	31.73	31.96
AT3G15355.1	Thale cress	nucleus	34.05	31.36
KRH27240	Soybean	cytosol	39.22	31.25
KRH22096	Soybean	cytosol	39.75	30.84
Bra021105.1-P	Field mustard	nucleus	32.8	30.82
CDY20117	Canola	nucleus	32.8	30.77
VIT_19s0014g02760.t01	Wine grape	nucleus	41.0	30.67
PGSC0003DMT400064440	Potato	nucleus	39.39	30.36
PGSC0003DMT400039746	Potato	nucleus	36.72	28.41
CDY21838	Canola	cytosol	32.44	28.04
Solyc12g013820.1.1	Tomato	nucleus	36.36	27.49
KRH55293	Soybean	cytosol, peroxisome, plastid	34.58	22.32
TraesCS1A01G388400.1	Wheat	cytosol	31.73	21.12
TraesCS2A01G586300.1	Wheat	nucleus	29.41	16.96
TraesCS2A01G403400.1	Wheat	cytosol	29.95	16.95
TraesCS3A01G031600.1	Wheat	cytosol	28.88	16.25
TraesCS3A01G030400.1	Wheat	plasma membrane	28.34	15.95
TraesCS3A01G047700.3	Wheat	nucleus	31.55	15.9

Protein Annotations

EnsemblPlants:TraesCS1A01G388000.1	EnsemblPlantsGene:TraesCS1A01G388000	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	ncoils:Coil	PANTHER:PTHR44273	PANTHER:PTHR44273:SF6	PFAM:PF00179	PFscan:PS50127
SEG:seg	SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:35.1	:

Description

No Description!

Coordinates

chr1A:-:556796404..556800616

Molecular Weight (calculated)

62376.0 Da

IEP (calculated)

5.529

GRAVY (calculated)

-0.510

Length

561 amino acids

Sequence
(BLAST)

001: MATHPSKRSY LCAGSSSFDD PDVVEVSPAA AAAAGGWNPG HQKRKRSQVV PREIIEIDDD PDGVVIIGEK APVEKNKHSV GCPLVWPKHV KTSVAGDTAG
101: PSTYASNSTS IMGGFKKVSA GPSTYASNST TIMGDFKKVT SGPNTYFSSS TVIKDAFAKK YMETAVYHDY DDYPFDAFEE DEDFAYEEED YENYEFDDTL
201: YENEYNYNLS AQFDGLDIPP GVEAPLPWLQ KTAAEMSSNS KPIPIYDEKV DERYNTFKQF DTVDGHNDHY YVKPELRKAL VVKKPSKDWA KRIQHEWKVL
301: EKDLPDTIFV RAYEDRMDLL RAVIMGPAGT PYHDGLFFFD IYFPPQYPNT PPLVNYRSGG LRLNPNLYAC GKVCLSLLNT WAGSGCEKWN PSNSTMLQVL
401: VSIQALVLNA KPYFNEPGYA NSANTPAGEK RSLTYNEDTF LLSCRTMLYS LRNPPKHFED FVAGHFRKHG RNVLVACKAY LDGAQVGCLA GNGVQDVDEG
501: DKSCSLRFKT SLKRLFEELL MEFTVKGADC SKFLSEKAKQ SAASASGTTS RGPPADTTLR L

Best Arabidopsis Sequence Match ( AT3G15355.1 )
(BLAST)

001: MEPNVVEIAT PPAASCSRIR TPTKAETPEV IDVEEYDLQN GGVPNGNNVD YKNKGKAIDF DSMSYGDYGE EDEYAVGSPG DDYGYPESSP LSNSLLDPES
101: LIYEDDENYS EQYDFEMEAE PDNYSMYQDL FDGKDIPTGV EVSMDWFPNS ADKESASSSK SSHANNGNNS SKKATKASGI HSQFSSDMET PVAQPWNALP
201: HKAEGVIPNS AYALPQNSKA FQPPYAVHYS ALKTAFSNYL QPQTPDTVLG EAPAPAAGSS GLLPPNTPGF KSNAARFKEE PPILPPDDSR VKRNMEDYLG
301: LYLFFKRFDI VEDFSDHHYA SKGTTSKQHS KDWAKRIQDE WRILEKDLPE MIFVRAYESR MDLLRAVIIG AQGTPYHDGL FFFDIFFPDT YPSTPPIVHY
401: HSGGLRINPN LYNCGKVCLS LLGTWSGNQR EKWIPNTSTM LQVLVSIQGL ILNQKPYFNE PGYERSAGSA HGESTSKAYS ENTFILSLKT MVYTMRRPPK
501: YFEDFAYGHF FSCAHDVLKA CNAYRNGATP GYLVKGAPDV EENSAGMSSL KFRTDVATFV ETVLLKEFIL LGVLGLEPEE EEKTPETIIV AESSKCTRSR
601: SKRDRVSSS

Arabidopsis Description

UBC25Probable ubiquitin-conjugating enzyme E2 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.