Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G388000.1 | Wheat | cytosol, mitochondrion, nucleus | 97.85 | 97.5 |
| TraesCS1B01G415500.2 | Wheat | nucleus | 97.85 | 97.5 |
| HORVU1Hr1G085630.1 | Barley | cytosol, nucleus | 89.8 | 86.7 |
| Os05t0557600-01 | Rice | cytosol | 70.66 | 77.6 |
| GSMUA_Achr7P25120_001 | Banana | cytosol | 35.06 | 65.55 |
| GSMUA_Achr9P00210_001 | Banana | plastid | 58.5 | 60.89 |
| GSMUA_Achr6P22670_001 | Banana | cytosol | 49.37 | 60.26 |
| Zm00001d009513_P003 | Maize | cytosol | 42.75 | 60.2 |
| TraesCS3D01G269000.1 | Wheat | nucleus | 56.35 | 59.43 |
| EES19929 | Sorghum | nucleus | 52.95 | 58.38 |
| CDY30673 | Canola | nucleus | 18.25 | 56.35 |
| CDY51802 | Canola | cytosol | 20.04 | 54.63 |
| Bra036393.1-P | Field mustard | cytosol, extracellular | 8.23 | 54.12 |
| KRH26136 | Soybean | cytosol | 28.26 | 51.97 |
| TraesCS7D01G206600.1 | Wheat | cytosol | 21.11 | 50.64 |
| TraesCS4D01G289700.1 | Wheat | cytosol | 20.39 | 49.78 |
| TraesCS5D01G272300.1 | Wheat | cytosol, nucleus, plastid | 30.05 | 49.12 |
| TraesCS3D01G164800.2 | Wheat | mitochondrion, nucleus, plastid | 32.74 | 48.41 |
| CDY25883 | Canola | cytosol | 23.97 | 47.35 |
| Bra038095.1-P | Field mustard | cytosol, nucleus, peroxisome | 27.19 | 46.77 |
| TraesCS3D01G164200.1 | Wheat | nucleus, plastid | 37.39 | 46.34 |
| TraesCS3D01G164900.3 | Wheat | nucleus | 30.23 | 45.92 |
| AT1G53023.1 | Thale cress | cytosol | 25.94 | 45.89 |
| KRH26135 | Soybean | cytosol | 30.77 | 44.22 |
| Bra041020.1-P | Field mustard | plastid | 25.76 | 43.77 |
| TraesCS5D01G272400.1 | Wheat | nucleus | 33.81 | 41.72 |
| CDY25884 | Canola | plastid | 24.51 | 41.39 |
| PGSC0003DMT400047166 | Potato | nucleus | 33.81 | 40.91 |
| KRH58633 | Soybean | cytosol, nucleus | 32.56 | 40.62 |
| Solyc07g053960.2.1 | Tomato | nucleus | 33.63 | 40.6 |
| VIT_12s0028g03630.t01 | Wine grape | nucleus | 37.03 | 40.51 |
| CDX71178 | Canola | cytosol | 30.59 | 39.68 |
| KRH42541 | Soybean | nucleus | 33.63 | 39.66 |
| TraesCS1D01G125200.2 | Wheat | plastid | 36.31 | 38.96 |
| CDY55875 | Canola | nucleus | 29.34 | 38.41 |
| Bra030965.1-P | Field mustard | nucleus | 31.66 | 37.66 |
| CDY02528 | Canola | cytosol | 31.66 | 36.88 |
| CDY47562 | Canola | cytosol | 31.66 | 36.72 |
| CDY24125 | Canola | cytosol | 31.48 | 36.21 |
| Bra040814.1-P | Field mustard | cytosol | 29.87 | 35.91 |
| CDY25886 | Canola | cytosol | 29.87 | 35.91 |
| CDX75824 | Canola | cytosol | 29.87 | 35.76 |
| CDX82439 | Canola | cytosol | 29.16 | 35.51 |
| Bra019007.1-P | Field mustard | cytosol | 31.48 | 35.41 |
| CDY26018 | Canola | cytosol | 32.02 | 35.24 |
| Solyc10g007000.2.1 | Tomato | cytosol | 39.53 | 33.13 |
| Bra001591.1-P | Field mustard | nucleus | 31.66 | 32.84 |
| CDX98552 | Canola | cytosol | 31.66 | 32.54 |
| AT1G53025.2 | Thale cress | nucleus | 32.2 | 32.32 |
| Bra027252.1-P | Field mustard | cytosol | 31.66 | 32.18 |
| CDX97660 | Canola | cytosol | 31.66 | 32.07 |
| AT3G15355.1 | Thale cress | nucleus | 34.17 | 31.36 |
| KRH27240 | Soybean | cytosol | 39.36 | 31.25 |
| KRH22096 | Soybean | cytosol | 40.07 | 30.98 |
| Bra021105.1-P | Field mustard | nucleus | 32.92 | 30.82 |
| CDY20117 | Canola | nucleus | 32.92 | 30.77 |
| VIT_19s0014g02760.t01 | Wine grape | nucleus | 40.97 | 30.53 |
| PGSC0003DMT400064440 | Potato | nucleus | 39.36 | 30.22 |
| PGSC0003DMT400039746 | Potato | nucleus | 36.67 | 28.28 |
| CDY21838 | Canola | cytosol | 32.74 | 28.2 |
| Solyc12g013820.1.1 | Tomato | nucleus | 36.31 | 27.36 |
| KRH55293 | Soybean | cytosol, peroxisome, plastid | 34.53 | 22.21 |
| TraesCS1D01G396300.1 | Wheat | nucleus | 31.48 | 20.61 |
| TraesCS2D01G400600.1 | Wheat | nucleus | 30.23 | 16.9 |
| TraesCS2D01G051900.1 | Wheat | cytosol | 29.52 | 16.82 |
| TraesCS2D01G600300.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 29.16 | 16.75 |
| TraesCS3D01G015300.1 | Wheat | plasma membrane | 28.98 | 16.1 |
| TraesCS3D01G015200.1 | Wheat | cytosol | 28.62 | 16.0 |
| TraesCS3D01G032000.4 | Wheat | nucleus | 31.48 | 15.81 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G396000.2 | EnsemblPlantsGene:TraesCS1D01G396000 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR44273 | PANTHER:PTHR44273:SF6 | PFAM:PF00179 | PFscan:PS50127 | SEG:seg |
| SMART:SM00212 | SUPFAM:SSF54495 | TIGR:cd00195 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1D:-:464322833..464326880
Molecular Weight (calculated)
62085.8 Da
IEP (calculated)
5.527
GRAVY (calculated)
-0.485
Length
559 amino acids
Sequence
(BLAST)
(BLAST)
001: MATHPSKRSY LCAGSSSFDD PDVVEVSPAA AAAAGGWNPG HQKRKRSQVV PREIIEIDDD PDGVVIIGEK APVEKNKHSV GCPLVWPKHV KTSVAGDTAG
101: PSTYASNSTA IMGGFKKVSA GPSTYASNST TIMGDFKKVT SGPNTYFSSS TAVKDAFAKK YMETAVYHDY DDYPFDAFEE DEDFAYEEDD YENYEFDDTL
201: YENEYNYNLS AQFDGLDIPP GMEAPLPWLQ KTAAEMSSNS KPIPILDEKV DERYSTFKQF DTVDGHSDHY YVKPELRKAL VVKKPSKDWA KRIQHEWKVL
301: EKDLPDTIFV RAYEDRMDLL RVVIMGPAGT PYHDGLFFFD IYFPPQYPNI PPLVNYRSGG LRLNPNLYAC GKVCLSLLNT WAGSGCEKWN PSNSTMLQVL
401: VSIQALVLNA KPYFNEPGYA NSANTPGGEK RSLTYNEDTF LLSCRTMLYS LRNPPKHFED FVAGHFRKHG RNVLVACKAY LDGAQVGCLA GNGVQDVDEG
501: DKSCSLKFKT SLKRLFEELL MEFTVKGADC SKFLSEKAKQ SAASATTSRG PPADTTLRL
101: PSTYASNSTA IMGGFKKVSA GPSTYASNST TIMGDFKKVT SGPNTYFSSS TAVKDAFAKK YMETAVYHDY DDYPFDAFEE DEDFAYEEDD YENYEFDDTL
201: YENEYNYNLS AQFDGLDIPP GMEAPLPWLQ KTAAEMSSNS KPIPILDEKV DERYSTFKQF DTVDGHSDHY YVKPELRKAL VVKKPSKDWA KRIQHEWKVL
301: EKDLPDTIFV RAYEDRMDLL RVVIMGPAGT PYHDGLFFFD IYFPPQYPNI PPLVNYRSGG LRLNPNLYAC GKVCLSLLNT WAGSGCEKWN PSNSTMLQVL
401: VSIQALVLNA KPYFNEPGYA NSANTPGGEK RSLTYNEDTF LLSCRTMLYS LRNPPKHFED FVAGHFRKHG RNVLVACKAY LDGAQVGCLA GNGVQDVDEG
501: DKSCSLKFKT SLKRLFEELL MEFTVKGADC SKFLSEKAKQ SAASATTSRG PPADTTLRL
001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR
Arabidopsis Description
Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.