Factsheet for Solyc07g053960.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047166	Potato	nucleus	95.03	95.24
HORVU3Hr1G109730.1	Barley	cytosol	21.6	62.11
HORVU1Hr1G090980.2	Barley	cytosol	23.97	55.5
GSMUA_Achr7P25120_001	Banana	cytosol	34.77	53.85
KRH58633	Soybean	cytosol, nucleus	50.32	52.01
Zm00001d009007_P001	Maize	cytosol	26.57	50.2
KRH42541	Soybean	nucleus	50.32	49.16
TraesCS5D01G272300.1	Wheat	cytosol, nucleus, plastid	35.85	48.54
VIT_12s0028g03630.t01	Wine grape	nucleus	53.56	48.53
Os01t0677500-00	Rice	cytosol	34.34	46.09
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	20.09	46.04
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	19.87	45.54
HORVU2Hr1G062530.3	Barley	cytosol	12.31	43.85
HORVU5Hr1G000190.3	Barley	cytosol	12.1	43.08
KXG31477	Sorghum	mitochondrion, plastid	33.91	42.66
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	34.34	42.06
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	33.69	41.71
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	33.91	41.64
Zm00001d039280_P005	Maize	mitochondrion, nucleus, plastid	33.26	41.29
KXG31481	Sorghum	nucleus	40.82	41.18
Zm00001d039285_P001	Maize	cytosol, plastid	39.96	41.11
GSMUA_Achr6P22670_001	Banana	cytosol	40.6	41.05
TraesCS3B01G183000.1	Wheat	nucleus, plastid	39.96	40.93
Zm00001d047959_P001	Maize	cytosol	19.65	40.81
TraesCS3D01G164200.1	Wheat	nucleus, plastid	39.74	40.8
GSMUA_Achr10P...	Banana	nucleus	41.9	40.76
Zm00001d009513_P003	Maize	cytosol	34.77	40.55
TraesCS3A01G156300.1	Wheat	nucleus, plastid	39.74	40.53
TraesCS3B01G183800.2	Wheat	nucleus	32.18	40.49
TraesCS3D01G164900.3	Wheat	nucleus	31.75	39.95
TraesCS3A01G157300.2	Wheat	nucleus	31.53	39.78
HORVU3Hr1G031950.4	Barley	mitochondrion	31.53	39.78
TraesCS5D01G272400.1	Wheat	nucleus	38.88	39.74
Os05t0232500-01	Rice	nucleus, plastid	39.96	39.61
Os09t0294300-01	Rice	nucleus	36.93	39.49
EES17914	Sorghum	plastid	39.09	39.35
TraesCS5B01G264000.1	Wheat	nucleus	38.44	39.29
HORVU1Hr1G029800.11	Barley	plastid	40.39	39.2
HORVU3Hr1G031890.10	Barley	cytosol, nucleus	33.69	39.2
HORVU3Hr1G031730.4	Barley	nucleus, plastid	39.96	38.54
TraesCS1A01G129500.2	Wheat	nucleus	41.04	38.54
Zm00001d049101_P001	Maize	cytosol	12.96	38.46
GSMUA_Achr9P00210_001	Banana	plastid	44.28	38.17
EES19929	Sorghum	nucleus	41.47	37.87
Os01t0232500-01	Rice	nucleus	39.52	37.73
Os05t0557600-01	Rice	cytosol	40.17	36.54
TraesCS1B01G146400.2	Wheat	plastid	40.82	36.42
TraesCS1D01G125200.2	Wheat	plastid	40.6	36.08
KXG33109	Sorghum	nucleus	40.17	34.83
TraesCS3D01G269000.1	Wheat	nucleus	39.74	34.72
TraesCS3B01G303300.1	Wheat	nucleus	39.52	34.53
TraesCS3A01G269200.1	Wheat	nucleus	39.09	34.15
TraesCS1B01G415500.2	Wheat	nucleus	41.25	34.05
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	41.04	33.87
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	40.6	33.63
Os01t0233900-01	Rice	mitochondrion	33.05	32.9
HORVU1Hr1G085630.1	Barley	cytosol, nucleus	41.04	32.82
HORVU3Hr1G062370.3	Barley	golgi	39.74	31.24
Solyc10g007000.2.1	Tomato	cytosol	44.71	31.03
Solyc01g079290.1.1	Tomato	cytosol	18.36	29.93
Solyc12g013820.1.1	Tomato	nucleus	42.12	26.28
Os01t0229900-01	Rice	mitochondrion	15.12	25.74
Solyc02g078210.2.1	Tomato	cytosol	40.17	20.11
Solyc01g111680.2.1	Tomato	nucleus	36.07	16.83
Os03t0679300-01	Rice	mitochondrion	4.97	13.86

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625
GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135	UniProt:K4CFU1	PFAM:PF00179	PFscan:PS50127
PANTHER:PTHR44273	PANTHER:PTHR44273:SF5	SMART:SM00212	SUPFAM:SSF54495	EnsemblPlantsGene:Solyc07g053960.2	EnsemblPlants:Solyc07g053960.2.1
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000276C206	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:+:62357894..62361578

Molecular Weight (calculated)

51314.2 Da

IEP (calculated)

4.287

GRAVY (calculated)

-0.538

Length

463 amino acids

Sequence
(BLAST)

001: MDVEIEEISA HDGSVKVKDN KEVMTEDNPD TVAGSTPGST DSGIKNSSNL DITFHEDEND GDDGLDDCDD MSNYDDDDDD YMYYDDEEDE CDYLSMQAQF
101: DNVDLPAGVE ATVSWLNEPA PSSKVSSQAS SSSHLAGAQT LNSTLSEHAS SSFAQVPASS SSLVSGGSNS CGKEEVTEDE LMKKYRSFKH FDVVEDFSDH
201: HYSNLGVKGQ QPPKAWSKKV QDEWKILEND LPDTIYVRVY EARMDLLRAV IIGPQGTPYH DGLFVFDVLF PQNYPDVPPM VYYYSGGLRL NPNLYDCGKV
301: CLSLLNTWTG KGNERWMPNS STMLQVLVSI QALILNSKPF FNEPGYEASY AGPEGQRRSN SYNEDVFVLS LKTMTYTLRR PPKHFEDLVK GHFRCHAVDI
401: LSACKAYIEG APVGSVVNGI VQDLSATAEK SSVTFRESVS RMKNGLISLF TKNGANDCDR FRA

Best Arabidopsis Sequence Match ( AT1G53025.2 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSSIKEFLAN IGRCVFQ

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.