Factsheet for HORVU1Hr1G029800.11

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G129500.2	Wheat	nucleus	89.73	86.82
TraesCS1B01G146400.2	Wheat	plastid	90.15	82.85
TraesCS1D01G125200.2	Wheat	plastid	90.15	82.53
Os05t0232500-01	Rice	nucleus, plastid	73.79	75.37
EES17914	Sorghum	plastid	69.6	72.17
HORVU3Hr1G031730.4	Barley	nucleus, plastid	62.68	62.29
HORVU3Hr1G109730.1	Barley	cytosol	20.96	62.11
HORVU1Hr1G090980.2	Barley	cytosol	23.69	56.5
CDY30673	Canola	nucleus	20.13	53.04
HORVU2Hr1G062530.3	Barley	cytosol	13.42	49.23
CDY51802	Canola	cytosol	20.96	48.78
HORVU5Hr1G000190.3	Barley	cytosol	13.21	48.46
Bra036393.1-P	Field mustard	cytosol, extracellular	8.18	45.88
KRH26136	Soybean	cytosol	27.67	43.42
AT1G53023.1	Thale cress	cytosol	28.51	43.04
GSMUA_Achr10P...	Banana	nucleus	41.93	42.02
HORVU3Hr1G031890.10	Barley	cytosol, nucleus	34.59	41.46
Bra041020.1-P	Field mustard	plastid	28.51	41.34
CDY25884	Canola	plastid	28.51	41.09
PGSC0003DMT400047166	Potato	nucleus	39.62	40.91
HORVU3Hr1G031950.4	Barley	mitochondrion	31.45	40.87
CDY25883	Canola	cytosol	24.11	40.64
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	27.67	40.62
Solyc07g053960.2.1	Tomato	nucleus	39.2	40.39
KRH58633	Soybean	cytosol, nucleus	37.53	39.96
KRH26135	Soybean	cytosol	31.24	38.3
KRH42541	Soybean	nucleus	37.74	37.97
VIT_12s0028g03630.t01	Wine grape	nucleus	38.16	35.62
HORVU1Hr1G085630.1	Barley	cytosol, nucleus	41.09	33.85
CDX71178	Canola	cytosol	30.4	33.64
CDX75824	Canola	cytosol	32.91	33.62
Bra030965.1-P	Field mustard	nucleus	33.12	33.62
CDX82439	Canola	cytosol	31.87	33.12
CDY02528	Canola	cytosol	32.91	32.71
CDY47562	Canola	cytosol	32.91	32.57
CDY55875	Canola	nucleus	28.93	32.32
CDX98552	Canola	cytosol	36.48	31.99
CDX97660	Canola	cytosol	36.9	31.88
Bra027252.1-P	Field mustard	cytosol	36.48	31.64
CDY24125	Canola	cytosol	32.08	31.48
Bra001591.1-P	Field mustard	nucleus	35.22	31.17
Bra019007.1-P	Field mustard	cytosol	32.29	30.99
HORVU3Hr1G062370.3	Barley	golgi	37.95	30.73
CDY26018	Canola	cytosol	32.7	30.71
Bra040814.1-P	Field mustard	cytosol	29.77	30.54
CDY25886	Canola	cytosol	29.77	30.54
AT1G53025.2	Thale cress	nucleus	35.22	30.16
Bra021105.1-P	Field mustard	nucleus	36.69	29.31
CDY20117	Canola	nucleus	36.27	28.93
AT3G15355.1	Thale cress	nucleus	36.06	28.24
CDY21838	Canola	cytosol	36.48	26.81
KRH27240	Soybean	cytosol	38.16	25.85
Solyc10g007000.2.1	Tomato	cytosol	36.06	25.79
KRH22096	Soybean	cytosol	38.57	25.45
VIT_19s0014g02760.t01	Wine grape	nucleus	37.74	24.0
PGSC0003DMT400039746	Potato	nucleus	36.27	23.86
PGSC0003DMT400064440	Potato	nucleus	36.27	23.76
Solyc12g013820.1.1	Tomato	nucleus	36.69	23.58
KRH55293	Soybean	cytosol, peroxisome, plastid	33.75	18.53
HORVU1Hr1G085570.2	Barley	cytosol	31.66	17.83
HORVU3Hr1G004520.2	Barley	nucleus	30.4	13.16

Protein Annotations

EnsemblPlants:HORVU1Hr1G029800.11	EnsemblPlantsGene:HORVU1Hr1G029800	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF3	PFAM:PF00179	PFscan:PS50127	SEG:seg
SMART:SM00212	SUPFAM:SSF54495	UniParc:UPI000B47B2A0	UniProt:A0A287F1E2	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr1H:+:166558209..166564588

Molecular Weight (calculated)

53425.8 Da

IEP (calculated)

4.365

GRAVY (calculated)

-0.565

Length

477 amino acids

Sequence
(BLAST)

001: ASSCRAADAA AWDAVQQQKR QRCQGSSSSD KVGSCTENNS FEASETELQN FDSGEIEEED YDMDDEDEGC YDDDNEGSDY EFDESDFNQQ LADKFDDLDL
101: PPGVEATVPW LQKAATDDGP GNFKSMSEIE DDIGKKYKFF KQFDTVEDFS DHHYANKPVG KAGKAWTKRI QHDWKLLEND LPVSIYVRVS ENRMDLLRAV
201: MIGPQGTPYH DGLFFFDAQF TSSYPATPPV SVDILITSYV MYFHILSEIP VLVLLQTVYY HSGGLRLNPN LYACGKVCLS LLGTWEGHGC EKWNSAHSTM
301: LQVLISIQAL VLNEKPYFNE PGYETYANNA SGQRTALEYN DTTFQYSCRT MLYSLRRAPQ HFEDLVAGHF RERGRAILAA CKYYMEGNTV GSVVPDEDDE
401: DKELQTANAE GSSSSSAVKP KNNEVDLRAG AGVVRPASFK TNMEVLFEEL LMEFNVKGAD TKKFCAEKLK KSQPAAA

Best Arabidopsis Sequence Match ( AT1G53023.1 )
(BLAST)

001: MVEIKDSSNV RKLKEEFLRD FKRFDTVEDF SDHHYAAEGS PAKLSLWHLK FKGRPKNWVK DIQKEWKILD KNLPETIFVR ACESRIDLLR AVIIGAEGTP
101: YHDGLFFFDI QFPDTYPSVP PKVHYHSGGL RINPNLYKCG KVCLSLISTW TGKKREKWLP KESTMLQLLV SIQALILNEK PYYNEPGYEK SMGTPLGESY
201: SKDYSENVFV FSLKTMHFEE FVRSHFFVRS HDIVKACNAY KDGAPVGSID KGGVKKQTRQ RGSLKFRINV TSFMKTVVDE FVNLGAIREA NHRGEPNPTL
301: FSCFFFCYLE LIICSV

Arabidopsis Description

UBC39Putative ubiquitin-conjugating enzyme E2 39 [Source:UniProtKB/Swiss-Prot;Acc:F4HPP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.