Factsheet for TraesCS1D01G125200.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G146400.2	Wheat	plastid	97.7	98.07
TraesCS1A01G129500.2	Wheat	nucleus	88.48	93.51
HORVU1Hr1G029800.11	Barley	plastid	82.53	90.15
TraesCS5D01G272300.1	Wheat	cytosol, nucleus, plastid	53.55	81.58
Os05t0232500-01	Rice	nucleus, plastid	69.67	77.73
TraesCS5D01G272400.1	Wheat	nucleus	66.79	76.82
EES17914	Sorghum	plastid	66.03	74.78
TraesCS3D01G164200.1	Wheat	nucleus, plastid	57.77	66.74
CDY30673	Canola	nucleus	18.62	53.59
CDY51802	Canola	cytosol	19.58	49.76
TraesCS7D01G206600.1	Wheat	cytosol	21.5	48.07
Bra036393.1-P	Field mustard	cytosol, extracellular	7.49	45.88
TraesCS4D01G289700.1	Wheat	cytosol	19.96	45.41
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	32.63	44.97
AT1G53023.1	Thale cress	cytosol	26.49	43.67
KRH26136	Soybean	cytosol	25.14	43.09
GSMUA_Achr10P...	Banana	nucleus	38.77	42.44
TraesCS3D01G164900.3	Wheat	nucleus	29.56	41.85
Bra041020.1-P	Field mustard	plastid	26.3	41.64
CDY25884	Canola	plastid	26.3	41.39
CDY25883	Canola	cytosol	22.46	41.34
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	25.72	41.23
PGSC0003DMT400047166	Potato	nucleus	36.47	41.13
Solyc07g053960.2.1	Tomato	nucleus	36.08	40.6
KRH58633	Soybean	cytosol, nucleus	34.55	40.18
KRH42541	Soybean	nucleus	34.74	38.19
KRH26135	Soybean	cytosol	28.41	38.05
VIT_12s0028g03630.t01	Wine grape	nucleus	35.7	36.4
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	38.96	36.31
TraesCS3D01G269000.1	Wheat	nucleus	35.51	34.91
Bra030965.1-P	Field mustard	nucleus	31.09	34.47
CDX71178	Canola	cytosol	28.41	34.34
CDX75824	Canola	cytosol	30.52	34.05
CDX82439	Canola	cytosol	29.75	33.77
CDY02528	Canola	cytosol	30.9	33.54
CDY47562	Canola	cytosol	30.9	33.4
CDY55875	Canola	nucleus	27.06	33.02
CDX98552	Canola	cytosol	34.17	32.72
CDX97660	Canola	cytosol	34.55	32.61
Bra027252.1-P	Field mustard	cytosol	34.17	32.36
CDY24125	Canola	cytosol	29.75	31.89
Bra019007.1-P	Field mustard	cytosol	29.94	31.39
Bra040814.1-P	Field mustard	cytosol	27.83	31.18
CDY25886	Canola	cytosol	27.83	31.18
Bra001591.1-P	Field mustard	nucleus	32.25	31.17
CDY26018	Canola	cytosol	30.33	31.1
AT1G53025.2	Thale cress	nucleus	33.01	30.88
Bra021105.1-P	Field mustard	nucleus	34.55	30.15
CDY20117	Canola	nucleus	34.17	29.77
AT3G15355.1	Thale cress	nucleus	33.78	28.9
CDY21838	Canola	cytosol	33.97	27.27
KRH27240	Soybean	cytosol	35.7	26.42
Solyc10g007000.2.1	Tomato	cytosol	33.59	26.24
KRH22096	Soybean	cytosol	36.28	26.14
PGSC0003DMT400039746	Potato	nucleus	34.17	24.55
VIT_19s0014g02760.t01	Wine grape	nucleus	35.12	24.4
PGSC0003DMT400064440	Potato	nucleus	33.78	24.18
Solyc12g013820.1.1	Tomato	nucleus	34.17	23.99
KRH55293	Soybean	cytosol, peroxisome, plastid	31.48	18.87
TraesCS1D01G396300.1	Wheat	nucleus	30.71	18.74
TraesCS2D01G400600.1	Wheat	nucleus	28.98	15.1
TraesCS3D01G015300.1	Wheat	plasma membrane	28.41	14.71
TraesCS2D01G051900.1	Wheat	cytosol	27.64	14.68
TraesCS3D01G015200.1	Wheat	cytosol	28.02	14.6
TraesCS2D01G600300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	27.06	14.49
TraesCS3D01G032000.4	Wheat	nucleus	28.98	13.57

Protein Annotations

EnsemblPlants:TraesCS1D01G125200.2	EnsemblPlantsGene:TraesCS1D01G125200	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF3	PFAM:PF00179	PFscan:PS50127	SEG:seg
SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1D:-:132854368..132861724

Molecular Weight (calculated)

57852.0 Da

IEP (calculated)

4.710

GRAVY (calculated)

-0.668

Length

521 amino acids

Sequence
(BLAST)

001: MFLCVRPLCT ATRTTPSPSP AHTSSAGPSP TRPLPAPGRP PLAARRLPRH PLDFAMDASE YPHMQGGASS SSSSCRAADA AAWDAVQQQK RQRCQGSSSG
101: DKVGSCTENN SFKASEAELQ NFDSGEIEEE DYYIDDEDEG CYDDDNEGSD YEFDESDFNQ QLADKFDDLD LPPGVEASVP WLQKAATDDG PGNFKSMSEI
201: EDEIGKKYKF FKQFDTVEDF SDHHYANKPV GKTGKEWTKR IQHDWKLLEN DLPASIYVRV SENRMDLLRA VMIGPQGTPY HDGLFFFDAQ FPASYPASPP
301: IVYYHSGGLR LNPNLYACGK VCLSLLGTWE GHGCEKWNSA HSTMLQVLIS IQALVLNEKP YFNEPGYETY ANNASGQRTA LEYNDTTFQY SCRTMLYSLR
401: RAPQHFEDLV AGHFRERGRA ILAACKYYME GNKVGSMVPD EDDEDKELES ANAEGSSSSS AVKPKNNQVD LRAGAGVVRP ASFKTNMEVL FEELLMEFNV
501: KGADTKKFCA EKLKKSQPAA A

Best Arabidopsis Sequence Match ( AT1G53023.1 )
(BLAST)

001: MVEIKDSSNV RKLKEEFLRD FKRFDTVEDF SDHHYAAEGS PAKLSLWHLK FKGRPKNWVK DIQKEWKILD KNLPETIFVR ACESRIDLLR AVIIGAEGTP
101: YHDGLFFFDI QFPDTYPSVP PKVHYHSGGL RINPNLYKCG KVCLSLISTW TGKKREKWLP KESTMLQLLV SIQALILNEK PYYNEPGYEK SMGTPLGESY
201: SKDYSENVFV FSLKTMHFEE FVRSHFFVRS HDIVKACNAY KDGAPVGSID KGGVKKQTRQ RGSLKFRINV TSFMKTVVDE FVNLGAIREA NHRGEPNPTL
301: FSCFFFCYLE LIICSV

Arabidopsis Description

UBC39Putative ubiquitin-conjugating enzyme E2 39 [Source:UniProtKB/Swiss-Prot;Acc:F4HPP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.