Factsheet for TraesCS5D01G272300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G264000.1	Wheat	nucleus	93.86	70.86
TraesCS5D01G272400.1	Wheat	nucleus	78.66	59.38
TraesCS1D01G125200.2	Wheat	plastid	81.58	53.55
CDY30673	Canola	nucleus	28.07	53.04
Os05t0232500-01	Rice	nucleus, plastid	70.76	51.82
EES17914	Sorghum	plastid	67.54	50.22
Bra036393.1-P	Field mustard	cytosol, extracellular	12.28	49.41
TraesCS3D01G164200.1	Wheat	nucleus, plastid	63.74	48.34
CDY51802	Canola	cytosol	28.66	47.8
TraesCS7D01G206600.1	Wheat	cytosol	32.16	47.21
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	48.54	43.92
TraesCS4D01G289700.1	Wheat	cytosol	29.24	43.67
KRH26136	Soybean	cytosol	37.72	42.43
AT1G53023.1	Thale cress	cytosol	39.18	42.41
CDY25884	Canola	plastid	39.77	41.09
Bra041020.1-P	Field mustard	plastid	39.47	41.03
TraesCS3D01G164900.3	Wheat	nucleus	43.57	40.49
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	37.72	39.69
CDY25883	Canola	cytosol	32.75	39.58
KRH26135	Soybean	cytosol	42.98	37.79
KRH58633	Soybean	cytosol, nucleus	47.66	36.38
GSMUA_Achr10P...	Banana	nucleus	50.58	36.34
PGSC0003DMT400047166	Potato	nucleus	48.83	36.15
Solyc07g053960.2.1	Tomato	nucleus	48.54	35.85
KRH42541	Soybean	nucleus	47.95	34.6
CDX71178	Canola	cytosol	40.35	32.02
CDY55875	Canola	nucleus	38.89	31.15
VIT_12s0028g03630.t01	Wine grape	nucleus	46.49	31.12
Bra030965.1-P	Field mustard	nucleus	42.11	30.64
CDX82439	Canola	cytosol	40.64	30.28
CDY47562	Canola	cytosol	42.4	30.08
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	49.12	30.05
CDY02528	Canola	cytosol	42.11	30.0
TraesCS3D01G269000.1	Wheat	nucleus	46.2	29.81
CDY24125	Canola	cytosol	41.81	29.42
Bra040814.1-P	Field mustard	cytosol	39.77	29.25
CDY25886	Canola	cytosol	39.77	29.25
Bra019007.1-P	Field mustard	cytosol	41.81	28.77
CDX75824	Canola	cytosol	38.89	28.48
CDY26018	Canola	cytosol	41.81	28.15
CDX98552	Canola	cytosol	43.86	27.57
AT1G53025.2	Thale cress	nucleus	44.74	27.47
CDX97660	Canola	cytosol	43.86	27.17
Bra027252.1-P	Field mustard	cytosol	43.57	27.09
Bra001591.1-P	Field mustard	nucleus	42.69	27.09
Bra021105.1-P	Field mustard	nucleus	43.57	24.96
AT3G15355.1	Thale cress	nucleus	44.15	24.79
CDY20117	Canola	nucleus	43.27	24.75
CDY21838	Canola	cytosol	43.27	22.8
Solyc10g007000.2.1	Tomato	cytosol	42.98	22.04
KRH27240	Soybean	cytosol	44.74	21.73
KRH22096	Soybean	cytosol	45.32	21.44
PGSC0003DMT400039746	Potato	nucleus	45.03	21.24
Solyc12g013820.1.1	Tomato	nucleus	44.74	20.62
VIT_19s0014g02760.t01	Wine grape	nucleus	45.03	20.53
PGSC0003DMT400064440	Potato	nucleus	43.27	20.33
KRH55293	Soybean	cytosol, peroxisome, plastid	42.98	16.92
TraesCS1D01G396300.1	Wheat	nucleus	38.6	15.46
TraesCS2D01G051900.1	Wheat	cytosol	39.77	13.86
TraesCS2D01G400600.1	Wheat	nucleus	39.77	13.6
TraesCS3D01G015200.1	Wheat	cytosol	38.01	13.0
TraesCS2D01G600300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	36.84	12.95
TraesCS3D01G015300.1	Wheat	plasma membrane	37.72	12.82
TraesCS3D01G032000.4	Wheat	nucleus	40.06	12.31

Protein Annotations

EnsemblPlants:TraesCS5D01G272300.1	EnsemblPlantsGene:TraesCS5D01G272300	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF3	PFAM:PF00179	PFscan:PS50127	SEG:seg
SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5D:-:375411208..375413790

Molecular Weight (calculated)

38548.6 Da

IEP (calculated)

7.882

GRAVY (calculated)

-0.601

Length

342 amino acids

Sequence
(BLAST)

001: MSTRPRPAVP LVQKAVTDDG PDNFKSMSEI EDEIGKKYKL FKQFDIIKDF SDHHYASNPV GKTGKEWTKR IQHDWKLLEN NLPASIYVRV SENRMDLLRA
101: VIIGPQGTPY HDGLFFFDAQ FTASYPATPP VVYYHSGGLR LNPNLYDCGT VCLSLLGTWH GNGCENWNSA HSSMLQVLIS IQGLILNEKP YFNEPGYETE
201: VNDANGQRRS LEYNDTAFQH SCGTMLYSLR RPPQHFEDLV AGHFRERGHA ILAACKYYME GNEVGSVVPD EDDEGKELEN ANARAGAGRR TASFKGDMKV
301: LFEELLVEFS VKGADTKKFC AEKVKKTRQK KKKLKKSQPA AA

Best Arabidopsis Sequence Match ( AT3G15355.1 )
(BLAST)

001: MEPNVVEIAT PPAASCSRIR TPTKAETPEV IDVEEYDLQN GGVPNGNNVD YKNKGKAIDF DSMSYGDYGE EDEYAVGSPG DDYGYPESSP LSNSLLDPES
101: LIYEDDENYS EQYDFEMEAE PDNYSMYQDL FDGKDIPTGV EVSMDWFPNS ADKESASSSK SSHANNGNNS SKKATKASGI HSQFSSDMET PVAQPWNALP
201: HKAEGVIPNS AYALPQNSKA FQPPYAVHYS ALKTAFSNYL QPQTPDTVLG EAPAPAAGSS GLLPPNTPGF KSNAARFKEE PPILPPDDSR VKRNMEDYLG
301: LYLFFKRFDI VEDFSDHHYA SKGTTSKQHS KDWAKRIQDE WRILEKDLPE MIFVRAYESR MDLLRAVIIG AQGTPYHDGL FFFDIFFPDT YPSTPPIVHY
401: HSGGLRINPN LYNCGKVCLS LLGTWSGNQR EKWIPNTSTM LQVLVSIQGL ILNQKPYFNE PGYERSAGSA HGESTSKAYS ENTFILSLKT MVYTMRRPPK
501: YFEDFAYGHF FSCAHDVLKA CNAYRNGATP GYLVKGAPDV EENSAGMSSL KFRTDVATFV ETVLLKEFIL LGVLGLEPEE EEKTPETIIV AESSKCTRSR
601: SKRDRVSSS

Arabidopsis Description

UBC25Probable ubiquitin-conjugating enzyme E2 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.