Factsheet for PGSC0003DMT400064440

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g007000.2.1	Tomato	cytosol	82.55	90.1
CDY30673	Canola	nucleus	15.66	62.98
HORVU3Hr1G109730.1	Barley	cytosol	13.19	59.63
Bra036393.1-P	Field mustard	cytosol, extracellular	6.87	58.82
CDY51802	Canola	cytosol	15.93	56.59
KRH26136	Soybean	cytosol	22.94	54.93
HORVU1Hr1G090980.2	Barley	cytosol	14.97	54.5
GSMUA_Achr7P25120_001	Banana	cytosol	21.98	53.51
AT1G53023.1	Thale cress	cytosol	22.39	51.58
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	22.66	50.77
CDY25883	Canola	cytosol	19.64	50.53
PGSC0003DMT400039746	Potato	nucleus	50.14	50.34
Bra041020.1-P	Field mustard	plastid	22.66	50.15
CDY25884	Canola	plastid	22.39	49.24
KRH26135	Soybean	cytosol	26.1	48.84
Os01t0677500-00	Rice	cytosol	22.94	48.41
Zm00001d009007_P001	Maize	cytosol	16.07	47.76
HORVU2Hr1G062530.3	Barley	cytosol	8.38	46.92
Os09t0294300-01	Rice	nucleus	27.88	46.88
CDX71178	Canola	cytosol	27.75	46.87
HORVU5Hr1G000190.3	Barley	cytosol	8.24	46.15
PGSC0003DMT400047166	Potato	nucleus	28.98	45.67
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	12.36	44.55
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	12.36	44.55
CDY55875	Canola	nucleus	25.82	44.03
Bra030965.1-P	Field mustard	nucleus	28.16	43.62
GSMUA_Achr6P22670_001	Banana	cytosol	27.34	43.45
TraesCS5D01G272300.1	Wheat	cytosol, nucleus, plastid	20.33	43.27
Os05t0557600-01	Rice	cytosol	30.08	43.03
CDY47562	Canola	cytosol	28.43	42.95
CDY24125	Canola	cytosol	28.57	42.8
CDY02528	Canola	cytosol	28.16	42.71
Bra019007.1-P	Field mustard	cytosol	28.71	42.05
CDX82439	Canola	cytosol	26.51	42.05
CDY26018	Canola	cytosol	29.26	41.93
EES19929	Sorghum	nucleus	28.98	41.62
KXG31477	Sorghum	mitochondrion, plastid	21.02	41.58
Zm00001d009513_P003	Maize	cytosol	22.66	41.56
Zm00001d047959_P001	Maize	cytosol	12.64	41.26
GSMUA_Achr9P00210_001	Banana	plastid	30.36	41.15
TraesCS3D01G164200.1	Wheat	nucleus, plastid	25.41	41.02
TraesCS3A01G156300.1	Wheat	nucleus, plastid	25.55	40.97
TraesCS3B01G183000.1	Wheat	nucleus, plastid	25.41	40.93
Bra040814.1-P	Field mustard	cytosol	26.1	40.86
CDY25886	Canola	cytosol	26.1	40.86
GSMUA_Achr10P...	Banana	nucleus	26.37	40.34
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	20.88	40.21
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	20.74	40.05
Zm00001d039285_P001	Maize	cytosol, plastid	24.73	40.0
PGSC0003DMT400011956	Potato	cytosol	17.58	39.88
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	20.47	39.84
TraesCS1B01G415500.2	Wheat	nucleus	30.63	39.75
Zm00001d039280_P005	Maize	mitochondrion, nucleus, plastid	20.33	39.68
TraesCS3B01G303300.1	Wheat	nucleus	28.85	39.62
TraesCS3D01G269000.1	Wheat	nucleus	28.85	39.62
TraesCS3A01G269200.1	Wheat	nucleus	28.71	39.43
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	30.36	39.39
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	30.22	39.36
CDX98552	Canola	cytosol	29.4	39.34
KXG33109	Sorghum	nucleus	28.71	39.14
KXG31481	Sorghum	nucleus	24.59	39.0
CDX75824	Canola	cytosol	25.0	38.97
Bra001591.1-P	Field mustard	nucleus	28.57	38.59
TraesCS3B01G183800.2	Wheat	nucleus	19.51	38.59
Zm00001d049101_P001	Maize	cytosol	8.24	38.46
CDX97660	Canola	cytosol	29.12	38.41
TraesCS3D01G164900.3	Wheat	nucleus	19.37	38.32
Bra027252.1-P	Field mustard	cytosol	28.85	38.18
HORVU1Hr1G085630.1	Barley	cytosol, nucleus	30.36	38.17
HORVU3Hr1G031950.4	Barley	mitochondrion	19.23	38.15
TraesCS3A01G157300.2	Wheat	nucleus	19.23	38.15
HORVU3Hr1G031730.4	Barley	nucleus, plastid	25.14	38.12
EES17914	Sorghum	plastid	23.9	37.83
HORVU3Hr1G031890.10	Barley	cytosol, nucleus	20.47	37.44
Os05t0232500-01	Rice	nucleus, plastid	23.9	37.26
VIT_19s0014g02760.t01	Wine grape	nucleus	38.19	37.07
AT1G53025.2	Thale cress	nucleus	28.3	36.98
KRH27240	Soybean	cytosol	35.58	36.79
Os01t0232500-01	Rice	nucleus	24.45	36.7
Bra021105.1-P	Field mustard	nucleus	30.08	36.68
TraesCS5B01G264000.1	Wheat	nucleus	22.8	36.64
TraesCS5D01G272400.1	Wheat	nucleus	22.8	36.64
CDY20117	Canola	nucleus	30.08	36.62
HORVU1Hr1G029800.11	Barley	plastid	23.76	36.27
TraesCS1A01G129500.2	Wheat	nucleus	24.45	36.11
KRH22096	Soybean	cytosol	35.71	35.96
AT3G15355.1	Thale cress	nucleus	30.08	35.96
HORVU3Hr1G062370.3	Barley	golgi	28.57	35.31
TraesCS1B01G146400.2	Wheat	plastid	24.18	33.91
TraesCS1D01G125200.2	Wheat	plastid	24.18	33.78
CDY21838	Canola	cytosol	30.08	33.74
Os01t0233900-01	Rice	mitochondrion	20.88	32.69
PGSC0003DMT400023282	Potato	cytosol	12.23	31.34
Os01t0229900-01	Rice	mitochondrion	10.58	28.31
KRH55293	Soybean	cytosol, peroxisome, plastid	31.46	26.35
PGSC0003DMT400076435	Potato	nucleus	24.73	19.44
PGSC0003DMT400015781	Potato	nucleus	25.0	15.69
Os03t0679300-01	Rice	mitochondrion	3.16	13.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400064440	EnsemblPlantsGene:PGSC0003DMG400025037	EntrezGene:102596954	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF5	PFAM:PF00179	PFscan:PS50127
PGSC:PGSC0003DMG400025037	SEG:seg	SMART:SM00212	SUPFAM:SSF54495	UniParc:UPI000296855A	UniProt:M1CCD5
MapMan:35.1	:	:	:	:	:

Description

Ubiquitin conjugating enzyme [Source:PGSC_GENE;Acc:PGSC0003DMG400025037]

Coordinates

chr10:-:1921563..1926112

Molecular Weight (calculated)

79750.6 Da

IEP (calculated)

7.742

GRAVY (calculated)

-0.292

Length

728 amino acids

Sequence
(BLAST)

001: MVLLMHRKRM FPGGSAIDVE VVEISRPTNW SSKSKTPKQK EVQIPIETKS LGDFFSSILA LVDRVIRYLM LVRGDMYLVE LVEVIFHEII DVDEEDFSDV
101: KRSCGNVKFS GKGKDILVGN GSSGNSGPVD GVQSSNTKCL SSSKKKKNCL SVSNSPIIID EFGSDVLFGA DENMDMYYDD LVYSDYAVLQ AHFDSMDIPP
201: GVEAPIPWMP GPMKEQMVST TTSTSGRDVS GVVRDQSTSF SSSTLVGQPT QFGSSWSSPG PALGKEGQLV IGNSNEKSSK GASNSKILSS GAEKKFSNIR
301: KKIHSSGATA SFDWNNPYKL YEESLSHYGK KLGSSGATTS YGSGNQSTPI GPYFPNPVGS PVSDMKNLFL NQTTPISAGI AHASAAMMNY SPLSLHKRAT
401: TAGCPSIPSG PACNGEQHRN LAEILKKFQV FKKFDTVEDH SDHFYSRQAS SGNLPSKNWA KKIQEEWKIL ENDLPDTIFV RVYESRMDLL RAVIMGADGT
501: PYHDGLYFFD VFFPSNYPSV PPLVHYHSFG LRINPNLYNC GKVCLSLLNT WTGQGKEKWI PRASTMLQVL VSIQGLILNA KPYFNEPGYA NTGGTTRGDA
601: SSLQYNENTY ILNLKTMVFS MRRPPKYFED FVLGHFFRSA QDILVACKAY TDGAQVGSLV RGGVQDVDEG DKSCSPTFKA SLAGFIKTVI DAFKEIGVKD
701: CDKFLYLAQR GTGVAPVVPA NTANYFFS

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.