Factsheet for GSMUA_Achr9P00210_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P22670_001	Banana	cytosol	65.92	77.29
GSMUA_Achr7P25120_001	Banana	cytosol	37.99	68.23
Os05t0557600-01	Rice	cytosol	61.45	64.83
Os01t0677500-00	Rice	cytosol	40.22	62.61
Os09t0294300-01	Rice	nucleus	50.28	62.36
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	60.89	58.5
TraesCS1B01G415500.2	Wheat	nucleus	60.71	58.11
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	60.34	57.75
TraesCS3A01G269200.1	Wheat	nucleus	56.42	57.17
TraesCS3D01G269000.1	Wheat	nucleus	56.24	56.98
CDY30673	Canola	nucleus	19.18	56.91
TraesCS3B01G303300.1	Wheat	nucleus	56.05	56.79
HORVU1Hr1G085630.1	Barley	cytosol, nucleus	59.4	55.09
CDY51802	Canola	cytosol	20.86	54.63
KXG33109	Sorghum	nucleus	54.19	54.49
Bra036393.1-P	Field mustard	cytosol, extracellular	8.57	54.12
KRH26136	Soybean	cytosol	30.35	53.62
Zm00001d009513_P003	Maize	cytosol	39.48	53.4
EES19929	Sorghum	nucleus	49.72	52.66
HORVU3Hr1G062370.3	Barley	golgi	56.05	51.1
GSMUA_Achr10P...	Banana	nucleus	43.95	49.58
CDY25883	Canola	cytosol	24.77	47.0
KRH26135	Soybean	cytosol	33.89	46.79
AT1G53023.1	Thale cress	cytosol	27.37	46.52
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	28.12	46.46
PGSC0003DMT400047166	Potato	nucleus	38.17	44.37
Solyc07g053960.2.1	Tomato	nucleus	38.17	44.28
Bra041020.1-P	Field mustard	plastid	27.0	44.07
VIT_12s0028g03630.t01	Wine grape	nucleus	41.71	43.84
CDY25884	Canola	plastid	26.07	42.3
CDX71178	Canola	cytosol	32.96	41.07
KRH58633	Soybean	cytosol, nucleus	34.08	40.85
KRH42541	Soybean	nucleus	35.57	40.3
CDY55875	Canola	nucleus	31.1	39.11
Bra030965.1-P	Field mustard	nucleus	33.15	37.87
CDX82439	Canola	cytosol	32.22	37.69
CDX75824	Canola	cytosol	32.59	37.47
CDY24125	Canola	cytosol	33.71	37.24
CDY47562	Canola	cytosol	33.15	36.93
CDY02528	Canola	cytosol	32.96	36.88
Bra019007.1-P	Field mustard	cytosol	33.71	36.42
CDY25886	Canola	cytosol	31.47	36.34
Bra040814.1-P	Field mustard	cytosol	31.47	36.34
CDY26018	Canola	cytosol	33.89	35.83
CDX98552	Canola	cytosol	36.13	35.66
CDX97660	Canola	cytosol	35.94	34.96
Bra027252.1-P	Field mustard	cytosol	35.75	34.91
Bra001591.1-P	Field mustard	nucleus	34.08	33.95
AT1G53025.2	Thale cress	nucleus	35.01	33.75
Solyc10g007000.2.1	Tomato	cytosol	40.78	32.83
KRH27240	Soybean	cytosol	43.02	32.81
KRH22096	Soybean	cytosol	42.83	31.81
CDY20117	Canola	nucleus	35.01	31.44
VIT_19s0014g02760.t01	Wine grape	nucleus	43.76	31.33
Bra021105.1-P	Field mustard	nucleus	34.82	31.32
AT3G15355.1	Thale cress	nucleus	35.38	31.2
PGSC0003DMT400064440	Potato	nucleus	41.15	30.36
CDY21838	Canola	cytosol	35.38	29.28
PGSC0003DMT400039746	Potato	nucleus	38.36	28.41
Solyc12g013820.1.1	Tomato	nucleus	38.36	27.76
GSMUA_Achr9P00220_001	Banana	cytosol	23.65	25.66
KRH55293	Soybean	cytosol, peroxisome, plastid	37.62	23.25
GSMUA_Achr9P06210_001	Banana	cytosol	35.01	21.03
GSMUA_Achr1P26360_001	Banana	nucleus	32.59	17.75
GSMUA_Achr8P34010_001	Banana	cytosol	32.4	16.99

Protein Annotations

EnsemblPlants:GSMUA_Achr9P00210_001	EnsemblPlants:GSMUA_Achr9T00210_001	EnsemblPlantsGene:GSMUA_Achr9G00210_001	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF6	PFAM:PF00179	PFscan:PS50127
SEG:seg	SMART:SM00212	SUPFAM:SSF54495	UniParc:UPI000296EE61	UniProt:M0TW78	MapMan:35.1

Description

Putative Probable ubiquitin-conjugating enzyme E2 25 [Source:GMGC_GENE;Acc:GSMUA_Achr9G00210_001]

Coordinates

chr9:-:255572..265078

Molecular Weight (calculated)

60288.0 Da

IEP (calculated)

5.025

GRAVY (calculated)

-0.439

Length

537 amino acids

Sequence
(BLAST)

001: MPSSAPSAPF FRSPPFSSFP PSPLPPPSWS CLSITVCRPC CRLPLFAGSS SYQDPDIVEV PPSSSAWTPS QPKRKRSQVV PHDVIELDGD DDPDDVMILG
101: DSTSDYKNKQ PVRHDKSWQK QVKDALSNDL LSSSANNGSE HAAPLDSLKI YDSGPLDLKY FDDLENEYAY DEDDYDDYES GAEVIENVFN FNLAAKFDDL
201: DLPTGIEATV PWLKNSAAEE PSKNKQTLVL EDEIDTKYRL FKQFDTVRDH SDHHFTRPGH LKIAPTVKKP SKDWAKRIQH EWKVLEKDLP ETIYVRIYEE
301: RMDILRAVIV GPAGTPYHDG LFFFDFFFPP NYPRVPPLVH YHSGGLRLNP NLYACGKVCL SLLNTWSGSG CEKWNPSNST MLQVLVSIQA LVLNAKPFFN
401: EPGYAQTANT DYGEKKSLAY NEDTFLLSCR TMLYSLRRPP MHFEDFVAGH FRSHGRIILV ACKAYMDGAQ VGCIVGEGVQ DVDEGDKSCS AAFKSSLKKL
501: FEDLLMEFTV KGADCDEFLA QKVKIGTAKM ADTTLRL

Best Arabidopsis Sequence Match ( AT3G15355.1 )
(BLAST)

001: MEPNVVEIAT PPAASCSRIR TPTKAETPEV IDVEEYDLQN GGVPNGNNVD YKNKGKAIDF DSMSYGDYGE EDEYAVGSPG DDYGYPESSP LSNSLLDPES
101: LIYEDDENYS EQYDFEMEAE PDNYSMYQDL FDGKDIPTGV EVSMDWFPNS ADKESASSSK SSHANNGNNS SKKATKASGI HSQFSSDMET PVAQPWNALP
201: HKAEGVIPNS AYALPQNSKA FQPPYAVHYS ALKTAFSNYL QPQTPDTVLG EAPAPAAGSS GLLPPNTPGF KSNAARFKEE PPILPPDDSR VKRNMEDYLG
301: LYLFFKRFDI VEDFSDHHYA SKGTTSKQHS KDWAKRIQDE WRILEKDLPE MIFVRAYESR MDLLRAVIIG AQGTPYHDGL FFFDIFFPDT YPSTPPIVHY
401: HSGGLRINPN LYNCGKVCLS LLGTWSGNQR EKWIPNTSTM LQVLVSIQGL ILNQKPYFNE PGYERSAGSA HGESTSKAYS ENTFILSLKT MVYTMRRPPK
501: YFEDFAYGHF FSCAHDVLKA CNAYRNGATP GYLVKGAPDV EENSAGMSSL KFRTDVATFV ETVLLKEFIL LGVLGLEPEE EEKTPETIIV AESSKCTRSR
601: SKRDRVSSS

Arabidopsis Description

UBC25Probable ubiquitin-conjugating enzyme E2 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.