Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G415500.2 | Wheat | nucleus | 87.05 | 89.84 |
| TraesCS1D01G396000.2 | Wheat | cytosol, mitochondrion, nucleus | 86.7 | 89.8 |
| TraesCS1A01G388000.1 | Wheat | cytosol, mitochondrion, nucleus | 86.36 | 89.13 |
| Os05t0557600-01 | Rice | cytosol | 66.67 | 75.83 |
| HORVU3Hr1G109730.1 | Barley | cytosol | 19.17 | 68.94 |
| GSMUA_Achr7P25120_001 | Banana | cytosol | 33.85 | 65.55 |
| Zm00001d009513_P003 | Maize | cytosol | 41.62 | 60.71 |
| HORVU1Hr1G090980.2 | Barley | cytosol | 20.55 | 59.5 |
| GSMUA_Achr9P00210_001 | Banana | plastid | 55.09 | 59.4 |
| GSMUA_Achr6P22670_001 | Banana | cytosol | 46.63 | 58.95 |
| CDY30673 | Canola | nucleus | 17.96 | 57.46 |
| EES19929 | Sorghum | nucleus | 50.09 | 57.2 |
| Bra036393.1-P | Field mustard | cytosol, extracellular | 8.12 | 55.29 |
| CDY51802 | Canola | cytosol | 19.17 | 54.15 |
| HORVU3Hr1G062370.3 | Barley | golgi | 53.2 | 52.29 |
| KRH26136 | Soybean | cytosol | 27.29 | 51.97 |
| HORVU2Hr1G062530.3 | Barley | cytosol | 11.05 | 49.23 |
| HORVU5Hr1G000190.3 | Barley | cytosol | 10.71 | 47.69 |
| CDY25883 | Canola | cytosol | 22.63 | 46.29 |
| HORVU3Hr1G031950.4 | Barley | mitochondrion | 29.19 | 46.05 |
| AT1G53023.1 | Thale cress | cytosol | 25.04 | 45.89 |
| Bra038095.1-P | Field mustard | cytosol, nucleus, peroxisome | 25.73 | 45.85 |
| HORVU3Hr1G031890.10 | Barley | cytosol, nucleus | 31.43 | 45.73 |
| KRH26135 | Soybean | cytosol | 29.88 | 44.47 |
| Bra041020.1-P | Field mustard | plastid | 24.7 | 43.47 |
| HORVU3Hr1G031730.4 | Barley | nucleus, plastid | 35.58 | 42.92 |
| PGSC0003DMT400047166 | Potato | nucleus | 32.99 | 41.34 |
| VIT_12s0028g03630.t01 | Wine grape | nucleus | 36.27 | 41.1 |
| HORVU1Hr1G029800.11 | Barley | plastid | 33.85 | 41.09 |
| CDY25884 | Canola | plastid | 23.49 | 41.09 |
| Solyc07g053960.2.1 | Tomato | nucleus | 32.82 | 41.04 |
| CDX71178 | Canola | cytosol | 30.4 | 40.84 |
| KRH58633 | Soybean | cytosol, nucleus | 31.43 | 40.62 |
| KRH42541 | Soybean | nucleus | 32.3 | 39.45 |
| CDY55875 | Canola | nucleus | 28.5 | 38.64 |
| Bra030965.1-P | Field mustard | nucleus | 30.92 | 38.09 |
| CDY02528 | Canola | cytosol | 30.92 | 37.29 |
| CDY47562 | Canola | cytosol | 30.74 | 36.93 |
| CDY24125 | Canola | cytosol | 30.57 | 36.42 |
| CDX82439 | Canola | cytosol | 28.84 | 36.38 |
| CDX75824 | Canola | cytosol | 29.19 | 36.19 |
| Bra040814.1-P | Field mustard | cytosol | 29.02 | 36.13 |
| CDY25886 | Canola | cytosol | 29.02 | 36.13 |
| CDY26018 | Canola | cytosol | 31.26 | 35.63 |
| Bra019007.1-P | Field mustard | cytosol | 30.57 | 35.61 |
| Bra001591.1-P | Field mustard | nucleus | 31.26 | 33.58 |
| CDX98552 | Canola | cytosol | 31.09 | 33.09 |
| Bra027252.1-P | Field mustard | cytosol | 31.09 | 32.73 |
| CDX97660 | Canola | cytosol | 31.09 | 32.61 |
| Solyc10g007000.2.1 | Tomato | cytosol | 37.48 | 32.53 |
| AT3G15355.1 | Thale cress | nucleus | 34.02 | 32.35 |
| AT1G53025.2 | Thale cress | nucleus | 30.74 | 31.96 |
| Bra021105.1-P | Field mustard | nucleus | 32.3 | 31.32 |
| CDY20117 | Canola | nucleus | 32.3 | 31.27 |
| KRH27240 | Soybean | cytosol | 37.82 | 31.11 |
| VIT_19s0014g02760.t01 | Wine grape | nucleus | 39.9 | 30.8 |
| KRH22096 | Soybean | cytosol | 38.34 | 30.71 |
| PGSC0003DMT400064440 | Potato | nucleus | 38.17 | 30.36 |
| CDY21838 | Canola | cytosol | 32.47 | 28.97 |
| PGSC0003DMT400039746 | Potato | nucleus | 35.06 | 28.0 |
| Solyc12g013820.1.1 | Tomato | nucleus | 34.72 | 27.09 |
| KRH55293 | Soybean | cytosol, peroxisome, plastid | 33.33 | 22.21 |
| HORVU1Hr1G085570.2 | Barley | cytosol | 30.57 | 20.9 |
| HORVU3Hr1G004520.2 | Barley | nucleus | 30.22 | 15.88 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G085630.1 | EnsemblPlantsGene:HORVU1Hr1G085630 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR44273 | PANTHER:PTHR44273:SF6 | PFAM:PF00179 | PFscan:PS50127 | SEG:seg |
| SMART:SM00212 | SUPFAM:SSF54495 | UniParc:UPI000B479562 | UniProt:A0A287GKG7 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr1H:-:535952479..535956239
Molecular Weight (calculated)
64280.3 Da
IEP (calculated)
5.861
GRAVY (calculated)
-0.466
Length
579 amino acids
Sequence
(BLAST)
(BLAST)
001: CRRRGYLCAG SSSFDDPDVV EVSPAAAAAA GGWNPAHQKR KRSQVVPHEI IEIDDDPDGV VIIGEKTPVE KNKHSVGCPL VWPKHVKYSV AGDTAGPSTY
101: ASNSAAIMGG FKKVTAEPST YASNSAAIMG GLKEVTSGSN TYVSSSTAVK YAFHKKYVET TAYHDYDDYH FDAFEEEEDF AYEEDDYYEN YEFDDTLYES
201: EYNYNLSANS DGLDIPPAVD APSLWLQKTS AEMSNNSKPI PILDDKVDEK YNTFKQFDTV DGHSDHYFAK PELRKALVVK KVMNLTCPVH PLPSYIGTNL
301: SYLQPSKDWA KRIQHEWKVL EKDLPDTIFV RAYEDRMDLL RAVIMGPAGT PYHDGLFFFD IYFPPQYPNT PPLVNYRSGG LRLNPNLYDC GKVCLSLLNT
401: WAGSGCEKWN PSNSTMLQVL VSIQALVLNA KPYFNEPGYA NSANTPAGEK RSLTYNEDTF LLSCRTMLYS LRNPPKHFED FATGHFRKHA HNVLVACKAY
501: LDGAQVGCLA GNGVQDVDEG DKSCSLKFKT SLKRLFEELL MAFTVKGADC GKFLSEKAKK SAASTSTSRG PPADTTLRL
101: ASNSAAIMGG FKKVTAEPST YASNSAAIMG GLKEVTSGSN TYVSSSTAVK YAFHKKYVET TAYHDYDDYH FDAFEEEEDF AYEEDDYYEN YEFDDTLYES
201: EYNYNLSANS DGLDIPPAVD APSLWLQKTS AEMSNNSKPI PILDDKVDEK YNTFKQFDTV DGHSDHYFAK PELRKALVVK KVMNLTCPVH PLPSYIGTNL
301: SYLQPSKDWA KRIQHEWKVL EKDLPDTIFV RAYEDRMDLL RAVIMGPAGT PYHDGLFFFD IYFPPQYPNT PPLVNYRSGG LRLNPNLYDC GKVCLSLLNT
401: WAGSGCEKWN PSNSTMLQVL VSIQALVLNA KPYFNEPGYA NSANTPAGEK RSLTYNEDTF LLSCRTMLYS LRNPPKHFED FATGHFRKHA HNVLVACKAY
501: LDGAQVGCLA GNGVQDVDEG DKSCSLKFKT SLKRLFEELL MAFTVKGADC GKFLSEKAKK SAASTSTSRG PPADTTLRL
001: MVEIKDSSNV RKLKEEFLRD FKRFDTVEDF SDHHYAAEGS PAKLSLWHLK FKGRPKNWVK DIQKEWKILD KNLPETIFVR ACESRIDLLR AVIIGAEGTP
101: YHDGLFFFDI QFPDTYPSVP PKVHYHSGGL RINPNLYKCG KVCLSLISTW TGKKREKWLP KESTMLQLLV SIQALILNEK PYYNEPGYEK SMGTPLGESY
201: SKDYSENVFV FSLKTMHFEE FVRSHFFVRS HDIVKACNAY KDGAPVGSID KGGVKKQTRQ RGSLKFRINV TSFMKTVVDE FVNLGAIREA NHRGEPNPTL
301: FSCFFFCYLE LIICSV
101: YHDGLFFFDI QFPDTYPSVP PKVHYHSGGL RINPNLYKCG KVCLSLISTW TGKKREKWLP KESTMLQLLV SIQALILNEK PYYNEPGYEK SMGTPLGESY
201: SKDYSENVFV FSLKTMHFEE FVRSHFFVRS HDIVKACNAY KDGAPVGSID KGGVKKQTRQ RGSLKFRINV TSFMKTVVDE FVNLGAIREA NHRGEPNPTL
301: FSCFFFCYLE LIICSV
Arabidopsis Description
UBC39Putative ubiquitin-conjugating enzyme E2 39 [Source:UniProtKB/Swiss-Prot;Acc:F4HPP7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.