Factsheet for GSMUA_Achr6P22670_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 4
extracellular 3
endoplasmic reticulum 3
vacuole 3
golgi 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P00210_001	Banana	plastid	77.29	65.92
GSMUA_Achr7P25120_001	Banana	cytosol	41.05	62.88
Os01t0677500-00	Rice	cytosol	44.76	59.42
CDY30673	Canola	nucleus	22.93	58.01
Bra036393.1-P	Field mustard	cytosol, extracellular	10.7	57.65
Os05t0557600-01	Rice	cytosol	61.79	55.6
Os09t0294300-01	Rice	nucleus	50.87	53.81
CDY51802	Canola	cytosol	22.71	50.73
KRH26136	Soybean	cytosol	33.41	50.33
Zm00001d009513_P003	Maize	cytosol	43.23	49.87
TraesCS3D01G269000.1	Wheat	nucleus	57.64	49.81
TraesCS3A01G269200.1	Wheat	nucleus	57.64	49.81
TraesCS3B01G303300.1	Wheat	nucleus	57.42	49.62
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	60.26	49.37
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	60.26	49.2
TraesCS1B01G415500.2	Wheat	nucleus	60.04	49.02
HORVU1Hr1G085630.1	Barley	cytosol, nucleus	58.95	46.63
KXG33109	Sorghum	nucleus	54.15	46.44
EES19929	Sorghum	nucleus	50.87	45.96
GSMUA_Achr10P...	Banana	nucleus	47.6	45.8
HORVU3Hr1G062370.3	Barley	golgi	57.64	44.82
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	31.44	44.31
AT1G53023.1	Thale cress	cytosol	30.35	43.99
Bra041020.1-P	Field mustard	plastid	31.22	43.47
CDY25883	Canola	cytosol	26.86	43.46
KRH26135	Soybean	cytosol	36.9	43.44
CDY25884	Canola	plastid	30.13	41.69
PGSC0003DMT400047166	Potato	nucleus	41.05	40.69
Solyc07g053960.2.1	Tomato	nucleus	41.05	40.6
VIT_12s0028g03630.t01	Wine grape	nucleus	44.98	40.31
KRH58633	Soybean	cytosol, nucleus	38.86	39.73
CDX71178	Canola	cytosol	36.03	38.28
KRH42541	Soybean	nucleus	39.08	37.76
CDY55875	Canola	nucleus	33.62	36.07
Bra030965.1-P	Field mustard	nucleus	36.68	35.74
CDX75824	Canola	cytosol	36.24	35.55
CDX82439	Canola	cytosol	35.59	35.51
CDY02528	Canola	cytosol	36.46	34.79
CDY47562	Canola	cytosol	36.46	34.65
CDY24125	Canola	cytosol	35.59	33.54
Bra019007.1-P	Field mustard	cytosol	36.03	33.2
Bra040814.1-P	Field mustard	cytosol	33.62	33.12
CDY25886	Canola	cytosol	33.62	33.12
CDY26018	Canola	cytosol	36.46	32.87
Bra001591.1-P	Field mustard	nucleus	38.21	32.47
CDX98552	Canola	cytosol	38.21	32.17
Bra027252.1-P	Field mustard	cytosol	38.21	31.82
CDX97660	Canola	cytosol	38.21	31.7
AT1G53025.2	Thale cress	nucleus	37.55	30.88
KRH27240	Soybean	cytosol	47.16	30.68
AT3G15355.1	Thale cress	nucleus	40.17	30.21
Bra021105.1-P	Field mustard	nucleus	39.3	30.15
CDY20117	Canola	nucleus	39.3	30.1
KRH22096	Soybean	cytosol	46.94	29.74
Solyc10g007000.2.1	Tomato	cytosol	43.23	29.69
VIT_19s0014g02760.t01	Wine grape	nucleus	46.94	28.67
CDY21838	Canola	cytosol	39.96	28.2
PGSC0003DMT400064440	Potato	nucleus	43.45	27.34
PGSC0003DMT400039746	Potato	nucleus	41.92	26.48
Solyc12g013820.1.1	Tomato	nucleus	42.58	26.28
GSMUA_Achr9P00220_001	Banana	cytosol	27.51	25.45
KRH55293	Soybean	cytosol, peroxisome, plastid	40.17	21.17
GSMUA_Achr9P06210_001	Banana	cytosol	39.08	20.02
GSMUA_Achr1P26360_001	Banana	nucleus	36.03	16.73
GSMUA_Achr8P34010_001	Banana	cytosol	35.37	15.82

Protein Annotations

EnsemblPlants:GSMUA_Achr6P22670_001	EnsemblPlants:GSMUA_Achr6T22670_001	EnsemblPlantsGene:GSMUA_Achr6G22670_001	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF6	PFAM:PF00179	PFscan:PS50127
SEG:seg	SMART:SM00212	SUPFAM:SSF54495	UniParc:UPI00029581BE	UniProt:M0T9B5	MapMan:35.1

Description

ubiquitin-conjugating enzyme domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G22670_001]

Coordinates

chr6:-:20950627..20954973

Molecular Weight (calculated)

51791.1 Da

IEP (calculated)

4.611

GRAVY (calculated)

-0.431

Length

458 amino acids

Sequence
(BLAST)

001: MFVFKVVPHV VIELVGDDDG VVSIGESTSD YKNKEAVRND KSCPKQPKDA LLNDLMSSSA NNDSEHVAPL DNLKSYEAGQ LDLKYYDDVE YDYAYDDEYD
101: YEYDAEDIEN DFDLNLATKF DDLDLPTGIE LTVPWLEVPA TKELSKNKDK IVIEDEIDVK YRSFKQLDTV QDHEDHYFSR PDLLKAIPST KKPSKDWSKR
201: IQHEWKVLEK DLPEMIYVRI YEGRMDILRA VIIGPPGTPY HDGLFFFDTY FPPNYPQTPP MVHYHSGGLR LNPNLYACGK VCLSLLNTWP GSGCETWNPL
301: NSTMLQVLIS IQALVLNTKP YFNEPGYAQT ANTDHGEKES LMYNENTFLL SCKTMLYSLR KPPTHFDDFV AGHFRNRGHT ILVACKAYMG GAQVGCVVGE
401: GVHDVSKGDK SCSPAFKSSL EKLFEDLLME FAVKGADCIE FLPQKAKVGI ANTADTTL

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.