Factsheet for TraesCS3B01G303300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G269000.1	Wheat	nucleus	98.68	98.68
TraesCS3A01G269200.1	Wheat	nucleus	97.92	97.92
HORVU3Hr1G062370.3	Barley	golgi	93.02	83.7
Os09t0294300-01	Rice	nucleus	56.79	69.52
Os01t0677500-00	Rice	cytosol	42.26	64.93
GSMUA_Achr7P25120_001	Banana	cytosol	35.47	62.88
KXG33109	Sorghum	nucleus	59.81	59.36
GSMUA_Achr6P22670_001	Banana	cytosol	49.62	57.42
GSMUA_Achr9P00210_001	Banana	plastid	56.79	56.05
TraesCS1B01G415500.2	Wheat	nucleus	59.06	55.79
CDY30673	Canola	nucleus	18.87	55.25
CDY51802	Canola	cytosol	20.75	53.66
Bra036393.1-P	Field mustard	cytosol, extracellular	8.3	51.76
TraesCS7B01G110500.1	Wheat	cytosol, plastid, vacuole	22.45	51.07
KRH26136	Soybean	cytosol	28.87	50.33
TraesCS3B01G029300.1	Wheat	peroxisome	20.19	49.77
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	33.58	47.21
AT1G53023.1	Thale cress	cytosol	27.92	46.84
CDY25883	Canola	cytosol	24.72	46.29
TraesCS3B01G183800.2	Wheat	nucleus	31.51	45.38
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	27.74	45.23
KRH26135	Soybean	cytosol	31.89	43.44
Bra041020.1-P	Field mustard	plastid	26.42	42.55
TraesCS3B01G183000.1	Wheat	nucleus, plastid	35.47	41.59
CDY25884	Canola	plastid	25.66	41.09
CDX71178	Canola	cytosol	32.45	39.91
PGSC0003DMT400047166	Potato	nucleus	34.53	39.61
Solyc07g053960.2.1	Tomato	nucleus	34.53	39.52
TraesCS5B01G264000.1	Wheat	nucleus	32.26	37.75
VIT_12s0028g03630.t01	Wine grape	nucleus	36.23	37.57
KRH58633	Soybean	cytosol, nucleus	31.7	37.5
CDY55875	Canola	nucleus	30.0	37.24
KRH42541	Soybean	nucleus	33.02	36.92
Bra030965.1-P	Field mustard	nucleus	32.64	36.81
CDY02528	Canola	cytosol	32.64	36.04
CDY47562	Canola	cytosol	32.64	35.89
CDX82439	Canola	cytosol	30.94	35.73
CDY24125	Canola	cytosol	32.64	35.6
TraesCS1B01G146400.2	Wheat	plastid	34.72	35.45
Bra019007.1-P	Field mustard	cytosol	33.21	35.41
CDY26018	Canola	cytosol	33.58	35.04
CDY25886	Canola	cytosol	30.38	34.62
Bra040814.1-P	Field mustard	cytosol	30.38	34.62
CDX75824	Canola	cytosol	30.38	34.48
CDX98552	Canola	cytosol	33.58	32.72
CDX97660	Canola	cytosol	33.77	32.43
Bra027252.1-P	Field mustard	cytosol	33.58	32.36
AT1G53025.2	Thale cress	nucleus	33.21	31.6
Solyc10g007000.2.1	Tomato	cytosol	39.43	31.33
Bra001591.1-P	Field mustard	nucleus	31.7	31.17
Bra021105.1-P	Field mustard	nucleus	33.96	30.15
CDY20117	Canola	nucleus	33.77	29.93
VIT_19s0014g02760.t01	Wine grape	nucleus	41.51	29.33
AT3G15355.1	Thale cress	nucleus	33.58	29.23
PGSC0003DMT400064440	Potato	nucleus	39.62	28.85
KRH27240	Soybean	cytosol	37.92	28.55
KRH22096	Soybean	cytosol	38.68	28.35
CDY21838	Canola	cytosol	33.4	27.27
PGSC0003DMT400039746	Potato	nucleus	35.47	25.93
Solyc12g013820.1.1	Tomato	nucleus	35.66	25.47
KRH55293	Soybean	cytosol, peroxisome, plastid	35.85	21.86
TraesCS1B01G415800.1	Wheat	cytosol	31.89	20.02
TraesCS5B01G359000.1	Wheat	cytosol	28.87	17.13
TraesCS2B01G421500.1	Wheat	golgi, mitochondrion, plasma membrane	30.94	16.84
TraesCS2B01G596800.1	Wheat	cytosol	28.87	16.4
TraesCS3B01G029000.1	Wheat	cytosol, nucleus, plasma membrane	30.19	16.16
TraesCS3B01G029100.1	Wheat	cytosol, nucleus, plasma membrane	30.19	16.11
TraesCS3B01G034500.5	Wheat	nucleus	31.89	15.17
TraesCS2B01G461900.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	29.25	14.96
TraesCS2B01G590500.1	Wheat	cytosol	10.57	9.14
TraesCS2B01G590700.1	Wheat	cytosol	10.75	8.77

Protein Annotations

EnsemblPlants:TraesCS3B01G303300.1	EnsemblPlantsGene:TraesCS3B01G303300	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF6	PFAM:PF00179	PFscan:PS50127	SEG:seg
SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3B:-:487493695..487498741

Molecular Weight (calculated)

58788.3 Da

IEP (calculated)

5.685

GRAVY (calculated)

-0.343

Length

530 amino acids

Sequence
(BLAST)

001: MAEGSSRSYP FGGSLVLDDP EVVEVPPEVA AGWNSVRQKR KRAQVAPHEI IELDADDDHD GVTIIDAKTS DYKNKQAVGH PVNCWKNAKI GLAAEDIALP
101: SAISAKVVYP WDGLGTYHGG PKLPIYGLPT DFAGPSSFAS YPWQSVGTYH TGTLPPAYFD DVLGAVGEEH YAYDEGDFSN YSYNTPLMEN DSSFNLNVDH
201: YGFPPSVGLY LPRGHVAPAD STQQRQQVKI VESEIEEKYK AFKQFDTVGD HSDHFYLKFR TVKKPSKDWV KRIQHEWKVL GKDLPDTIFV RAYEDRMDLL
301: RAVIVGPAGT PYHDGLFFFD VYFPSQYPCK PPQVNYRSGG LRLNPNLYAC GKVCLSLLNT WTGSGCEMWN PSTSTMLQVL VSIQALVLNA KPYFNEPGHS
401: MYANTPLGEK QSLAYNEETF LLSCRTMLYS LRNPPKHFEH FIGGHFRKYG RDILVGCKAY MGGAQVGCLA GDGVQDVDEG DKSCSQNFMC SLEILFKGLI
501: NEFTDLGVGC HEFQAQVVNS GAAADTTLRL

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.