Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G156300.1 | Wheat | nucleus, plastid | 98.67 | 98.24 |
| TraesCS3D01G164200.1 | Wheat | nucleus, plastid | 98.01 | 98.23 |
| HORVU3Hr1G031730.4 | Barley | nucleus, plastid | 93.58 | 88.12 |
| Zm00001d009007_P001 | Maize | cytosol | 39.16 | 72.24 |
| Zm00001d039285_P001 | Maize | cytosol, plastid | 66.37 | 66.67 |
| KXG31481 | Sorghum | nucleus | 66.59 | 65.58 |
| Os01t0232500-01 | Rice | nucleus | 69.03 | 64.33 |
| TraesCS1B01G146400.2 | Wheat | plastid | 67.48 | 58.77 |
| TraesCS5B01G264000.1 | Wheat | nucleus | 56.86 | 56.73 |
| CDY30673 | Canola | nucleus | 22.35 | 55.8 |
| CDY51802 | Canola | cytosol | 24.11 | 53.17 |
| Bra036393.1-P | Field mustard | cytosol, extracellular | 9.29 | 49.41 |
| KRH26136 | Soybean | cytosol | 31.19 | 46.38 |
| TraesCS7B01G110500.1 | Wheat | cytosol, plastid, vacuole | 23.01 | 44.64 |
| CDY25883 | Canola | cytosol | 27.88 | 44.52 |
| Bra038095.1-P | Field mustard | cytosol, nucleus, peroxisome | 31.64 | 44.0 |
| TraesCS3B01G183600.1 | Wheat | mitochondrion, nucleus | 36.5 | 43.77 |
| TraesCS3B01G029300.1 | Wheat | peroxisome | 20.8 | 43.72 |
| AT1G53023.1 | Thale cress | cytosol | 30.53 | 43.67 |
| GSMUA_Achr10P... | Banana | nucleus | 45.13 | 42.86 |
| Bra041020.1-P | Field mustard | plastid | 30.97 | 42.55 |
| CDY25884 | Canola | plastid | 30.75 | 41.99 |
| KRH58633 | Soybean | cytosol, nucleus | 40.71 | 41.07 |
| TraesCS3B01G183800.2 | Wheat | nucleus | 33.19 | 40.76 |
| PGSC0003DMT400047166 | Potato | nucleus | 41.15 | 40.26 |
| Solyc07g053960.2.1 | Tomato | nucleus | 40.93 | 39.96 |
| KRH26135 | Soybean | cytosol | 34.29 | 39.85 |
| KRH42541 | Soybean | nucleus | 41.15 | 39.24 |
| TraesCS1B01G415500.2 | Wheat | nucleus | 47.35 | 38.15 |
| VIT_12s0028g03630.t01 | Wine grape | nucleus | 40.27 | 35.62 |
| TraesCS3B01G303300.1 | Wheat | nucleus | 41.59 | 35.47 |
| CDX71178 | Canola | cytosol | 32.96 | 34.57 |
| CDY55875 | Canola | nucleus | 32.52 | 34.43 |
| CDX82439 | Canola | cytosol | 34.73 | 34.2 |
| Bra030965.1-P | Field mustard | nucleus | 34.51 | 33.19 |
| CDX75824 | Canola | cytosol | 34.29 | 33.19 |
| CDY02528 | Canola | cytosol | 34.29 | 32.29 |
| CDY47562 | Canola | cytosol | 34.29 | 32.16 |
| Bra040814.1-P | Field mustard | cytosol | 32.96 | 32.04 |
| CDY25886 | Canola | cytosol | 32.96 | 32.04 |
| CDX98552 | Canola | cytosol | 38.27 | 31.8 |
| CDY24125 | Canola | cytosol | 34.07 | 31.69 |
| Bra027252.1-P | Field mustard | cytosol | 38.27 | 31.45 |
| Bra019007.1-P | Field mustard | cytosol | 34.29 | 31.19 |
| Bra001591.1-P | Field mustard | nucleus | 37.17 | 31.17 |
| CDX97660 | Canola | cytosol | 38.05 | 31.16 |
| CDY26018 | Canola | cytosol | 34.51 | 30.71 |
| AT1G53025.2 | Thale cress | nucleus | 36.73 | 29.8 |
| Bra021105.1-P | Field mustard | nucleus | 38.5 | 29.15 |
| CDY20117 | Canola | nucleus | 38.05 | 28.76 |
| AT3G15355.1 | Thale cress | nucleus | 38.27 | 28.41 |
| Solyc10g007000.2.1 | Tomato | cytosol | 40.93 | 27.74 |
| CDY21838 | Canola | cytosol | 38.72 | 26.96 |
| KRH27240 | Soybean | cytosol | 41.59 | 26.7 |
| KRH22096 | Soybean | cytosol | 42.04 | 26.28 |
| PGSC0003DMT400064440 | Potato | nucleus | 40.93 | 25.41 |
| VIT_19s0014g02760.t01 | Wine grape | nucleus | 40.71 | 24.53 |
| PGSC0003DMT400039746 | Potato | nucleus | 38.94 | 24.28 |
| Solyc12g013820.1.1 | Tomato | nucleus | 38.5 | 23.45 |
| KRH55293 | Soybean | cytosol, peroxisome, plastid | 36.5 | 18.99 |
| TraesCS1B01G415800.1 | Wheat | cytosol | 34.07 | 18.25 |
| TraesCS5B01G359000.1 | Wheat | cytosol | 30.09 | 15.23 |
| TraesCS3B01G029100.1 | Wheat | cytosol, nucleus, plasma membrane | 31.86 | 14.5 |
| TraesCS3B01G029000.1 | Wheat | cytosol, nucleus, plasma membrane | 31.19 | 14.24 |
| TraesCS2B01G421500.1 | Wheat | golgi, mitochondrion, plasma membrane | 30.53 | 14.17 |
| TraesCS2B01G596800.1 | Wheat | cytosol | 28.54 | 13.83 |
| TraesCS2B01G461900.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane, plastid | 31.19 | 13.61 |
| TraesCS3B01G034500.5 | Wheat | nucleus | 32.74 | 13.29 |
| TraesCS2B01G590500.1 | Wheat | cytosol | 10.62 | 7.83 |
| TraesCS2B01G590700.1 | Wheat | cytosol | 10.4 | 7.23 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G183000.1 | EnsemblPlantsGene:TraesCS3B01G183000 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR44273 | PANTHER:PTHR44273:SF7 | PFAM:PF00179 | PFscan:PS50127 | SEG:seg |
| SMART:SM00212 | SUPFAM:SSF54495 | TIGR:cd00195 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr3B:+:193957839..193962156
Molecular Weight (calculated)
50619.1 Da
IEP (calculated)
4.431
GRAVY (calculated)
-0.735
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTECRGPQQ GGSSCWATGA AAWSSSQQKR QRCEGSSSDQ VGSSTSASVQ MSESELPDTD YAENEEEDYY MDDDDDDCDD ENGDDSEYEF DEADFNQQLA
101: DKFDDLDLPP GVEATVPWLQ KLAANDEQDG ASDELVEDEI TKKYKAFQQF YTVQNFSDHH YANKSVGKTS REWAKRIQHD WKLLEKDLPA SIFVRVAEDR
201: MDLLRAAIIG PKGTPYHDGL FFFDAHFTSN YPSEPPLVYY HSGGLRLNPN LYNCGKVCLS LLGTWSGSGC EKWNSAHSTM LQVLVSIQAL ILNEKPYFNE
301: PGYAGSANTA TGQQHSVEYN KTTFLHSCRT MLYSLRRPPE HFGDLVAGHF RERGRTILAA CKHYLEGNMV GSEVPEEEEA EYDGTGASSS SSSSSSVPKK
401: QEVLRVDPLG RRTQFTDNLK TLFEDLLMEF NVKGADTRKF LEDKVKKNLP AA
101: DKFDDLDLPP GVEATVPWLQ KLAANDEQDG ASDELVEDEI TKKYKAFQQF YTVQNFSDHH YANKSVGKTS REWAKRIQHD WKLLEKDLPA SIFVRVAEDR
201: MDLLRAAIIG PKGTPYHDGL FFFDAHFTSN YPSEPPLVYY HSGGLRLNPN LYNCGKVCLS LLGTWSGSGC EKWNSAHSTM LQVLVSIQAL ILNEKPYFNE
301: PGYAGSANTA TGQQHSVEYN KTTFLHSCRT MLYSLRRPPE HFGDLVAGHF RERGRTILAA CKHYLEGNMV GSEVPEEEEA EYDGTGASSS SSSSSSVPKK
401: QEVLRVDPLG RRTQFTDNLK TLFEDLLMEF NVKGADTRKF LEDKVKKNLP AA
001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR
Arabidopsis Description
Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.