Factsheet for TraesCS1B01G146400.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G125200.2	Wheat	plastid	98.07	97.7
TraesCS1A01G129500.2	Wheat	nucleus	88.25	92.9
HORVU1Hr1G029800.11	Barley	plastid	82.85	90.15
Os05t0232500-01	Rice	nucleus, plastid	69.94	77.73
EES17914	Sorghum	plastid	66.09	74.57
TraesCS5B01G264000.1	Wheat	nucleus	64.74	74.17
TraesCS3B01G183000.1	Wheat	nucleus, plastid	58.77	67.48
CDY30673	Canola	nucleus	18.69	53.59
CDY51802	Canola	cytosol	19.65	49.76
TraesCS7B01G110500.1	Wheat	cytosol, plastid, vacuole	21.58	48.07
TraesCS3B01G029300.1	Wheat	peroxisome	19.46	46.98
Bra036393.1-P	Field mustard	cytosol, extracellular	7.51	45.88
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	32.37	44.56
AT1G53023.1	Thale cress	cytosol	26.59	43.67
KRH26136	Soybean	cytosol	25.43	43.42
GSMUA_Achr10P...	Banana	nucleus	39.11	42.65
Bra041020.1-P	Field mustard	plastid	26.4	41.64
TraesCS3B01G183800.2	Wheat	nucleus	29.48	41.58
CDY25884	Canola	plastid	26.4	41.39
CDY25883	Canola	cytosol	22.54	41.34
PGSC0003DMT400047166	Potato	nucleus	36.8	41.34
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	25.82	41.23
Solyc07g053960.2.1	Tomato	nucleus	36.42	40.82
KRH58633	Soybean	cytosol, nucleus	34.87	40.4
KRH42541	Soybean	nucleus	35.07	38.4
KRH26135	Soybean	cytosol	28.71	38.3
TraesCS1B01G415500.2	Wheat	nucleus	39.31	36.36
VIT_12s0028g03630.t01	Wine grape	nucleus	35.65	36.2
TraesCS3B01G303300.1	Wheat	nucleus	35.45	34.72
Bra030965.1-P	Field mustard	nucleus	31.02	34.26
CDX71178	Canola	cytosol	28.32	34.11
CDX75824	Canola	cytosol	30.64	34.05
CDX82439	Canola	cytosol	29.87	33.77
CDY02528	Canola	cytosol	30.83	33.33
CDY47562	Canola	cytosol	30.83	33.2
CDY55875	Canola	nucleus	27.17	33.02
CDX98552	Canola	cytosol	34.3	32.72
CDX97660	Canola	cytosol	34.68	32.61
Bra027252.1-P	Field mustard	cytosol	34.3	32.36
CDY24125	Canola	cytosol	29.87	31.89
Bra019007.1-P	Field mustard	cytosol	30.06	31.39
Bra040814.1-P	Field mustard	cytosol	27.94	31.18
CDY25886	Canola	cytosol	27.94	31.18
Bra001591.1-P	Field mustard	nucleus	32.37	31.17
CDY26018	Canola	cytosol	30.44	31.1
AT1G53025.2	Thale cress	nucleus	32.95	30.7
Bra021105.1-P	Field mustard	nucleus	34.68	30.15
CDY20117	Canola	nucleus	34.3	29.77
AT3G15355.1	Thale cress	nucleus	33.72	28.74
CDY21838	Canola	cytosol	34.1	27.27
KRH27240	Soybean	cytosol	35.84	26.42
Solyc10g007000.2.1	Tomato	cytosol	33.72	26.24
KRH22096	Soybean	cytosol	36.22	26.0
PGSC0003DMT400039746	Potato	nucleus	34.3	24.55
VIT_19s0014g02760.t01	Wine grape	nucleus	35.45	24.53
PGSC0003DMT400064440	Potato	nucleus	33.91	24.18
Solyc12g013820.1.1	Tomato	nucleus	34.3	23.99
TraesCS1B01G415800.1	Wheat	cytosol	31.02	19.08
KRH55293	Soybean	cytosol, peroxisome, plastid	31.79	18.99
TraesCS5B01G359000.1	Wheat	cytosol	28.13	16.35
TraesCS2B01G421500.1	Wheat	golgi, mitochondrion, plasma membrane	28.71	15.3
TraesCS3B01G029100.1	Wheat	cytosol, nucleus, plasma membrane	29.09	15.21
TraesCS3B01G029000.1	Wheat	cytosol, nucleus, plasma membrane	28.52	14.95
TraesCS2B01G461900.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	29.29	14.67
TraesCS2B01G596800.1	Wheat	cytosol	26.01	14.47
TraesCS3B01G034500.5	Wheat	nucleus	28.9	13.46
TraesCS2B01G590500.1	Wheat	cytosol	10.4	8.81
TraesCS2B01G590700.1	Wheat	cytosol	10.21	8.15

Protein Annotations

EnsemblPlants:TraesCS1B01G146400.2	EnsemblPlantsGene:TraesCS1B01G146400	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF3	PFAM:PF00179	PFscan:PS50127	SEG:seg
SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1B:-:204405359..204413234

Molecular Weight (calculated)

57707.9 Da

IEP (calculated)

4.833

GRAVY (calculated)

-0.655

Length

519 amino acids

Sequence
(BLAST)

001: MFLCVRPLCL ATRTTPSPSP AHISSAGPSP TRRLPASGRP AARRLPRHPL HFAMDASEYP HMQGGASSSS SSCRAADAAA WDAVQQQKRQ RCQGSSSGDK
101: VGSCTENNSF KTSEAELQNF DSGEIEEEDY YVDDEDEGCY DDDNEGSDYE FDESDFNQQL ADKFDDLDLP PGVEASVPWL QKAATDDGPG IFKSMSEIED
201: EIGKKYKFFK QFDTVEDFSD HHYANKPVGK TGKEWTKRIQ HDWKLLENDL PASIYVRVSE NRMDLLRAVM IGPQGTPYHD GLFFFDAQFP ASYPASPPTV
301: YYHSGGLRLN PNLYACGKVC LSLLGTWEGH GCEKWNSAHS TMLQVLISIQ ALVLNEKPYF NEPGYETYAN NASGQRTALE YNDTTFQYSC RTMLYSLRRA
401: PQHFEDLVAG HFRERGRAIL AACKYYMEGN KVGSVVPDED DEDKELESAN AEGSSSSSAV KPKNNQVDLR AGAGVVRPAS FKTNMEVLFE ELLMEFNVKG
501: ADTKKFCAEK LKKSQPAAA

Best Arabidopsis Sequence Match ( AT1G53023.1 )
(BLAST)

001: MVEIKDSSNV RKLKEEFLRD FKRFDTVEDF SDHHYAAEGS PAKLSLWHLK FKGRPKNWVK DIQKEWKILD KNLPETIFVR ACESRIDLLR AVIIGAEGTP
101: YHDGLFFFDI QFPDTYPSVP PKVHYHSGGL RINPNLYKCG KVCLSLISTW TGKKREKWLP KESTMLQLLV SIQALILNEK PYYNEPGYEK SMGTPLGESY
201: SKDYSENVFV FSLKTMHFEE FVRSHFFVRS HDIVKACNAY KDGAPVGSID KGGVKKQTRQ RGSLKFRINV TSFMKTVVDE FVNLGAIREA NHRGEPNPTL
301: FSCFFFCYLE LIICSV

Arabidopsis Description

UBC39Putative ubiquitin-conjugating enzyme E2 39 [Source:UniProtKB/Swiss-Prot;Acc:F4HPP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.