Factsheet for VIT_19s0014g02760.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036393.1-P	Field mustard	cytosol, extracellular	7.2	63.53
HORVU3Hr1G109730.1	Barley	cytosol	13.2	61.49
CDY51802	Canola	cytosol	16.53	60.49
CDY30673	Canola	nucleus	14.4	59.67
GSMUA_Achr7P25120_001	Banana	cytosol	23.33	58.53
KRH26136	Soybean	cytosol	23.6	58.22
HORVU1Hr1G090980.2	Barley	cytosol	15.07	56.5
KRH26135	Soybean	cytosol	27.47	52.96
VIT_00s1927g00020.t01	Wine grape	cytosol, nucleus	16.93	52.7
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	22.67	52.31
CDY25883	Canola	cytosol	19.73	52.3
AT1G53023.1	Thale cress	cytosol	21.47	50.95
Bra041020.1-P	Field mustard	plastid	22.0	50.15
Os09t0294300-01	Rice	nucleus	28.8	49.88
Os01t0677500-00	Rice	cytosol	22.93	49.86
KRH27240	Soybean	cytosol	46.53	49.57
VIT_12s0028g03630.t01	Wine grape	nucleus	33.6	49.32
CDY25884	Canola	plastid	21.73	49.24
KRH22096	Soybean	cytosol	46.4	48.13
Zm00001d009007_P001	Maize	cytosol	15.6	47.76
Bra030965.1-P	Field mustard	nucleus	29.73	47.45
CDX71178	Canola	cytosol	27.2	47.33
GSMUA_Achr6P22670_001	Banana	cytosol	28.67	46.94
CDY02528	Canola	cytosol	29.47	46.04
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	12.4	46.04
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	12.4	46.04
CDY47562	Canola	cytosol	29.47	45.85
Os05t0557600-01	Rice	cytosol	31.07	45.78
CDY55875	Canola	nucleus	25.87	45.43
CDX82439	Canola	cytosol	27.73	45.32
TraesCS5D01G272300.1	Wheat	cytosol, nucleus, plastid	20.53	45.03
CDY24125	Canola	cytosol	28.93	44.65
Zm00001d009513_P003	Maize	cytosol	23.6	44.58
Bra019007.1-P	Field mustard	cytosol	29.47	44.47
CDY26018	Canola	cytosol	29.73	43.9
HORVU2Hr1G062530.3	Barley	cytosol	7.6	43.85
GSMUA_Achr9P00210_001	Banana	plastid	31.33	43.76
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	21.87	43.5
Zm00001d047959_P001	Maize	cytosol	12.93	43.5
KXG31477	Sorghum	mitochondrion, plastid	21.33	43.48
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	21.6	43.32
Bra040814.1-P	Field mustard	cytosol	26.8	43.23
CDY25886	Canola	cytosol	26.8	43.23
CDX75824	Canola	cytosol	26.8	43.04
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	21.6	42.86
EES19929	Sorghum	nucleus	28.93	42.8
Bra001591.1-P	Field mustard	nucleus	30.67	42.67
TraesCS3B01G183800.2	Wheat	nucleus	20.93	42.66
Zm00001d039280_P005	Maize	mitochondrion, nucleus, plastid	21.2	42.63
HORVU3Hr1G031950.4	Barley	mitochondrion	20.8	42.51
TraesCS3A01G157300.2	Wheat	nucleus	20.8	42.51
CDX98552	Canola	cytosol	30.8	42.46
HORVU5Hr1G000190.3	Barley	cytosol	7.33	42.31
VIT_05s0077g00850.t01	Wine grape	nucleus	20.4	42.27
TraesCS3D01G164900.3	Wheat	nucleus	20.67	42.12
TraesCS3D01G269000.1	Wheat	nucleus	29.73	42.08
CDX97660	Canola	cytosol	30.67	41.67
TraesCS3B01G303300.1	Wheat	nucleus	29.33	41.51
TraesCS3A01G269200.1	Wheat	nucleus	29.33	41.51
Bra027252.1-P	Field mustard	cytosol	30.4	41.45
Solyc10g007000.2.1	Tomato	cytosol	36.8	41.38
TraesCS1B01G415500.2	Wheat	nucleus	30.93	41.35
Zm00001d039285_P001	Maize	cytosol, plastid	24.8	41.33
TraesCS3D01G164200.1	Wheat	nucleus, plastid	24.8	41.24
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	30.67	41.0
GSMUA_Achr10P...	Banana	nucleus	26.0	40.97
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	30.53	40.97
KXG31481	Sorghum	nucleus	24.93	40.74
TraesCS3B01G183000.1	Wheat	nucleus, plastid	24.53	40.71
KXG33109	Sorghum	nucleus	28.93	40.64
AT1G53025.2	Thale cress	nucleus	30.13	40.57
TraesCS3A01G156300.1	Wheat	nucleus, plastid	24.53	40.53
HORVU3Hr1G031890.10	Barley	cytosol, nucleus	21.47	40.45
HORVU1Hr1G085630.1	Barley	cytosol, nucleus	30.8	39.9
EES17914	Sorghum	plastid	24.4	39.78
Os05t0232500-01	Rice	nucleus, plastid	24.53	39.4
Bra021105.1-P	Field mustard	nucleus	31.33	39.36
CDY20117	Canola	nucleus	31.33	39.3
Zm00001d049101_P001	Maize	cytosol	8.13	39.1
Os01t0232500-01	Rice	nucleus	25.2	38.97
TraesCS5D01G272400.1	Wheat	nucleus	23.47	38.85
AT3G15355.1	Thale cress	nucleus	31.07	38.26
PGSC0003DMT400064440	Potato	nucleus	37.07	38.19
TraesCS5B01G264000.1	Wheat	nucleus	22.8	37.75
HORVU1Hr1G029800.11	Barley	plastid	24.0	37.74
HORVU3Hr1G062370.3	Barley	golgi	29.6	37.69
TraesCS1A01G129500.2	Wheat	nucleus	24.4	37.12
HORVU3Hr1G031730.4	Barley	nucleus, plastid	23.73	37.08
CDY21838	Canola	cytosol	31.73	36.67
PGSC0003DMT400039746	Potato	nucleus	34.53	35.72
TraesCS1B01G146400.2	Wheat	plastid	24.53	35.45
Os01t0233900-01	Rice	mitochondrion	21.87	35.27
TraesCS1D01G125200.2	Wheat	plastid	24.4	35.12
Solyc12g013820.1.1	Tomato	nucleus	34.27	34.64
KRH55293	Soybean	cytosol, peroxisome, plastid	36.67	31.65
Os01t0229900-01	Rice	mitochondrion	10.13	27.94
VIT_00s0265g00070.t01	Wine grape	cytosol	24.53	19.49
Os03t0679300-01	Rice	mitochondrion	3.33	15.06
VIT_03s0038g02570.t01	Wine grape	nucleus	23.07	14.3

Protein Annotations

EntrezGene:100262286	wikigene:100262286	Gene3D:3.10.110.10	MapMan:35.1	ProteinID:CCB46344	ProteinID:CCB46344.1
UniProt:F6H248	EMBL:FN595229	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625
GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135	EntrezGene:LOC100262286	wikigene:LOC100262286	PFAM:PF00179
PFscan:PS50127	PANTHER:PTHR44273	PANTHER:PTHR44273:SF5	SMART:SM00212	SUPFAM:SSF54495	TIGR:TC63433
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000210A064	ArrayExpress:VIT_19s0014g02760	EnsemblPlantsGene:VIT_19s0014g02760	EnsemblPlants:VIT_19s0014g02760.t01
unigene:Vvi.12082	RefSeq:XP_002282404	RefSeq:XP_002282404.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:+:2820615..2830261

Molecular Weight (calculated)

82641.7 Da

IEP (calculated)

5.887

GRAVY (calculated)

-0.495

Length

750 amino acids

Sequence
(BLAST)

001: MDPEVVEIKL PALISQSSDS KKLKQKEVNH HEIIDIDIDE DSSDLMIIDE KVDRNKGKAI KNVSDGYFNY QAKDAVTNNH ASPTTAVNLE SLDGFPSSKS
101: FAPGVHSSIN IDGFVSDLSY DDDDNTDIYS DDFMDDDEYA ILQAHFDNVD IPPGVEAPIP WLPVSARSKK KSSSTANISS YVNKQTQPID LSLNQWFPEP
201: AQFKAGPTSV NGTSSQIQVD AVSQLPKLES SSSWLYPEAG QIKKKPNPFA ASTYSSSLTQ MGTANHSTGL EQSTALQFLG PTQRKKMPTS ANGSHNSETQ
301: LDNLDAVNFL PEWTTWGSPS PVGVGMKKPA SKSSSSHSSF HAQTGSLKML PGAEQFPYWW PSPPISSISN KEPSFMGDPA FFNFYDPFDP AHIVPEEDAD
401: YSLVLDHAGS PKNANATAAG SSAISSETIP NRGKGRNKDD ILNKFRLFKQ FDTVQDHSDH HYSCNGSSHT QPSKNWAKKI QEEWKILEKD LPDTISVRVY
501: ETRIDLLRAV IVGAEGTPYH DGLFFFDVFF PVDYPNAPPL VHYRSGGLRL NPNLYDNGKV CLSLLNTWSG DQNEKWIPGL STMLQVLVSI QGLILNAKPF
601: FNEPGFACMS GSASGEKRSL QYNENTFILS LKTMLYSMKK PPRHFEDFVL GHFCKHAHDI LVACKAYMDG AQVGCLVKGG VQDVDEGDKS CSKRFKDNLA
701: VFNNLLVKTF TNIGATGCEK FLTKEPEKPP PPERLNRRAG KSLKGVIIAS

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.