CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0294300-01	Rice	nucleus	57.12	70.44
Os01t0677500-00	Rice	cytosol	42.32	65.51
GSMUA_Achr7P25120_001	Banana	cytosol	34.83	62.21
TraesCS3D01G269000.1	Wheat	nucleus	59.36	59.81
TraesCS3B01G303300.1	Wheat	nucleus	59.36	59.81
TraesCS3A01G269200.1	Wheat	nucleus	59.18	59.62
CDY30673	Canola	nucleus	18.91	55.8
GSMUA_Achr9P00210_001	Banana	plastid	54.49	54.19
GSMUA_Achr6P22670_001	Banana	cytosol	46.44	54.15
CDY51802	Canola	cytosol	20.22	52.68
HORVU3Hr1G062370.3	Barley	golgi	57.87	52.46
Bra036393.1-P	Field mustard	cytosol, extracellular	8.24	51.76
EES19929	Sorghum	nucleus	47.75	50.3
KRH26136	Soybean	cytosol	28.28	49.67
KXG31477	Sorghum	mitochondrion, plastid	33.71	48.91
AT1G53023.1	Thale cress	cytosol	26.78	45.25
CDY25883	Canola	cytosol	23.22	43.82
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	26.4	43.38
KXG31481	Sorghum	nucleus	37.08	43.14
KRH26135	Soybean	cytosol	30.9	42.42
Bra041020.1-P	Field mustard	plastid	25.84	41.95
CDY25884	Canola	plastid	25.66	41.39
EES17914	Sorghum	plastid	35.39	41.09
PGSC0003DMT400047166	Potato	nucleus	35.02	40.48
Solyc07g053960.2.1	Tomato	nucleus	34.83	40.17
KRH58633	Soybean	cytosol, nucleus	32.77	39.06
CDX71178	Canola	cytosol	31.46	38.98
VIT_12s0028g03630.t01	Wine grape	nucleus	36.52	38.16
KRH42541	Soybean	nucleus	33.33	37.55
CDY55875	Canola	nucleus	29.59	37.0
Bra030965.1-P	Field mustard	nucleus	31.84	36.17
CDX82439	Canola	cytosol	30.71	35.73
CDY02528	Canola	cytosol	32.02	35.62
CDY47562	Canola	cytosol	32.02	35.48
CDY24125	Canola	cytosol	32.21	35.39
Bra019007.1-P	Field mustard	cytosol	32.4	34.81
CDY25886	Canola	cytosol	29.96	34.41
Bra040814.1-P	Field mustard	cytosol	29.96	34.41
CDX75824	Canola	cytosol	29.96	34.26
CDY26018	Canola	cytosol	32.21	33.86
CDX98552	Canola	cytosol	33.33	32.72
CDX97660	Canola	cytosol	33.33	32.25
Bra027252.1-P	Field mustard	cytosol	33.15	32.18
AT1G53025.2	Thale cress	nucleus	33.33	31.96
Bra001591.1-P	Field mustard	nucleus	32.21	31.91
Solyc10g007000.2.1	Tomato	cytosol	38.58	30.88
KRH27240	Soybean	cytosol	39.14	29.69
Bra021105.1-P	Field mustard	nucleus	33.15	29.65
CDY20117	Canola	nucleus	33.15	29.6
KRH22096	Soybean	cytosol	39.89	29.46
AT3G15355.1	Thale cress	nucleus	33.33	29.23
VIT_19s0014g02760.t01	Wine grape	nucleus	40.64	28.93
PGSC0003DMT400064440	Potato	nucleus	39.14	28.71
PGSC0003DMT400039746	Potato	nucleus	36.89	27.17
CDY21838	Canola	cytosol	32.58	26.81
Solyc12g013820.1.1	Tomato	nucleus	36.52	26.28
KRH55293	Soybean	cytosol, peroxisome, plastid	34.27	21.06
EES19930	Sorghum	cytosol	31.27	19.17
OQU79703	Sorghum	cytosol	27.9	17.27
EES02568	Sorghum	nucleus	31.27	15.1
OQU84284	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	22.28	14.03

Protein Annotations

EnsemblPlants:KXG33109	EnsemblPlantsGene:SORBI_3003G255700	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF5	PFAM:PF00179	PFscan:PS50127	ProteinID:KXG33109
ProteinID:KXG33109.1	SEG:seg	SMART:SM00212	SUPFAM:SSF54495	UniParc:UPI00081AD6A3	UniProt:A0A1B6Q5B0
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:59384358..59389502

Molecular Weight (calculated)

59495.1 Da

IEP (calculated)

5.332

GRAVY (calculated)

-0.462

Length

534 amino acids

Sequence
(BLAST)

001: MAEGSSRGYP SGSGDGWRLV LHDPDVVEVS AETAVEWSSS RSRRKKLKLP QVIPSDIIEL DDDDPDGVMI IGEKISNQKN EQEVVHMDWP EHTTELQSGM
101: STNLAGPSVI PVIDAFPWQG GHHNNVAGPS VIPATNFYPW DGLGAYHGGA LLPPIYSPPI YSNEFVGAPG EDHSNKYYNY STSLMESGSS FNSGANNYMD
201: LPLPPGAGAV LPWGYMPSTE MPHQPSQTKV VNTEIDEKYK TFKQFDTVSD YSDNFYALTG QRNVHAVKKP SKAWVKRIQH EWKVLEKDLP ETIYVRVYED
301: RMDLLRAVIV GPAGTPYHDG LFFFDVYFPS RYPSKPPLVN YRSGGLRLNP NLYECGKVCL SLLNTWSGTG CEMWNPSNST MLQVLVSIQA LVLNSKPYFN
401: EPGYAMHANT SQGEKQSMAY NEETFLLSCR TMQYSLRNPP KHFEDFIIGH FRNYGRKILK GCKSYMAGAQ VGCLVGDGVQ DVDEGDKSCS NNFKASLKPL
501: FEDLLKEFTN IGVNCDEFRN PGGTNIEADT ILKL

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.