Factsheet for GSMUA_Achr7P25120_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30673	Canola	nucleus	33.44	55.25
Bra036393.1-P	Field mustard	cytosol, extracellular	14.38	50.59
Os01t0677500-00	Rice	cytosol	56.86	49.28
CDY51802	Canola	cytosol	33.44	48.78
KRH26136	Soybean	cytosol	47.16	46.38
Os09t0294300-01	Rice	nucleus	65.22	45.03
AT1G53023.1	Thale cress	cytosol	45.48	43.04
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	46.15	42.46
CDY25883	Canola	cytosol	40.13	42.4
Bra041020.1-P	Field mustard	plastid	46.49	42.25
GSMUA_Achr6P22670_001	Banana	cytosol	62.88	41.05
CDY25884	Canola	plastid	44.82	40.48
KRH26135	Soybean	cytosol	52.17	40.1
Zm00001d009513_P003	Maize	cytosol	51.84	39.04
Os05t0557600-01	Rice	cytosol	65.55	38.51
EES19929	Sorghum	nucleus	64.88	38.26
GSMUA_Achr9P00210_001	Banana	plastid	68.23	37.99
TraesCS1B01G415500.2	Wheat	nucleus	66.56	35.47
TraesCS3B01G303300.1	Wheat	nucleus	62.88	35.47
GSMUA_Achr10P...	Banana	nucleus	56.19	35.29
TraesCS3D01G269000.1	Wheat	nucleus	62.54	35.28
TraesCS3A01G269200.1	Wheat	nucleus	62.21	35.09
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	65.55	35.06
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	65.55	34.94
PGSC0003DMT400047166	Potato	nucleus	53.85	34.85
KXG33109	Sorghum	nucleus	62.21	34.83
Solyc07g053960.2.1	Tomato	nucleus	53.85	34.77
HORVU1Hr1G085630.1	Barley	cytosol, nucleus	65.55	33.85
CDX71178	Canola	cytosol	48.16	33.41
KRH58633	Soybean	cytosol, nucleus	49.5	33.04
CDY55875	Canola	nucleus	47.16	33.02
VIT_12s0028g03630.t01	Wine grape	nucleus	54.85	32.09
HORVU3Hr1G062370.3	Barley	golgi	62.54	31.75
Bra040814.1-P	Field mustard	cytosol	48.83	31.4
CDY25886	Canola	cytosol	48.83	31.4
CDX82439	Canola	cytosol	48.16	31.37
KRH42541	Soybean	nucleus	49.16	31.01
Bra030965.1-P	Field mustard	nucleus	48.49	30.85
CDY02528	Canola	cytosol	48.49	30.21
CDY47562	Canola	cytosol	48.49	30.08
CDX75824	Canola	cytosol	46.82	29.98
CDY24125	Canola	cytosol	47.16	29.01
Bra019007.1-P	Field mustard	cytosol	47.83	28.77
CDX98552	Canola	cytosol	51.84	28.49
Bra027252.1-P	Field mustard	cytosol	51.84	28.18
CDY26018	Canola	cytosol	47.83	28.15
CDX97660	Canola	cytosol	51.84	28.08
Bra001591.1-P	Field mustard	nucleus	49.83	27.64
AT1G53025.2	Thale cress	nucleus	47.49	25.49
Bra021105.1-P	Field mustard	nucleus	49.83	24.96
CDY20117	Canola	nucleus	49.83	24.92
AT3G15355.1	Thale cress	nucleus	49.16	24.14
Solyc10g007000.2.1	Tomato	cytosol	53.51	23.99
VIT_19s0014g02760.t01	Wine grape	nucleus	58.53	23.33
CDY21838	Canola	cytosol	49.83	22.96
KRH27240	Soybean	cytosol	52.84	22.44
KRH22096	Soybean	cytosol	53.18	21.99
PGSC0003DMT400064440	Potato	nucleus	53.51	21.98
GSMUA_Achr9P00220_001	Banana	cytosol	35.45	21.41
PGSC0003DMT400039746	Potato	nucleus	50.84	20.97
Solyc12g013820.1.1	Tomato	nucleus	51.17	20.62
KRH55293	Soybean	cytosol, peroxisome, plastid	51.17	17.61
GSMUA_Achr9P06210_001	Banana	cytosol	49.16	16.44
GSMUA_Achr1P26360_001	Banana	nucleus	44.82	13.59
GSMUA_Achr8P34010_001	Banana	cytosol	44.82	13.09

Protein Annotations

EnsemblPlants:GSMUA_Achr7P25120_001	EnsemblPlants:GSMUA_Achr7T25120_001	EnsemblPlantsGene:GSMUA_Achr7G25120_001	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF5	PFAM:PF00179	PFscan:PS50127
SMART:SM00212	SUPFAM:SSF54495	UniParc:UPI0002959CCD	UniProt:M0TKJ8	MapMan:35.1	:

Description

Probable ubiquitin-conjugating enzyme E2 26 [Source:GMGC_GENE;Acc:GSMUA_Achr7G25120_001]

Coordinates

chr7:-:26892037..26894233

Molecular Weight (calculated)

34594.7 Da

IEP (calculated)

8.328

GRAVY (calculated)

-0.264

Length

299 amino acids

Sequence
(BLAST)

001: MKTTFDDEID MKYRLFKQFD VVQDHSDHYY KFSKIKRLFP LQPTKDWVRW IQHEWKILEN DLPETIYVRA YEERMDILRA VIVGPAGTPY HDGLFFFDIF
101: FPPTYPQKPP EVYYRSGGLR INPNLYDSGR VCLSLLNTWS GEGCEKWIPY KSSMLQVLVS IQALVLNAKP FFNEPVYAEI KSTPDVEKRS LIYNEGAFVL
201: SCRTMLYLVR NPPKHFGDFV AGHFRKHGGT ILKACYAYMN GVQVGCTISQ GINEVIEGSK NFSASFQTSL KLLSKDLLRE FTRKGADCSE FLALVEVKN

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.