Factsheet for VIT_12s0028g03630.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G109730.1	Barley	cytosol	19.37	61.49
HORVU1Hr1G090980.2	Barley	cytosol	22.31	57.0
GSMUA_Achr7P25120_001	Banana	cytosol	32.09	54.85
Solyc07g053960.2.1	Tomato	nucleus	48.53	53.56
PGSC0003DMT400047166	Potato	nucleus	47.55	52.6
VIT_00s1927g00020.t01	Wine grape	cytosol, nucleus	24.27	51.45
KRH58633	Soybean	cytosol, nucleus	42.86	48.88
Zm00001d009007_P001	Maize	cytosol	22.7	47.35
KRH42541	Soybean	nucleus	43.84	47.26
TraesCS5D01G272300.1	Wheat	cytosol, nucleus, plastid	31.12	46.49
Os01t0677500-00	Rice	cytosol	31.31	46.38
GSMUA_Achr6P22670_001	Banana	cytosol	40.31	44.98
HORVU2Hr1G062530.3	Barley	cytosol	11.35	44.62
HORVU5Hr1G000190.3	Barley	cytosol	11.35	44.62
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	17.61	44.55
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	17.42	44.06
Os09t0294300-01	Rice	nucleus	36.4	42.96
Zm00001d009513_P003	Maize	cytosol	32.88	42.32
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	31.12	42.18
KXG31477	Sorghum	mitochondrion, plastid	30.33	42.12
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	31.12	42.06
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	30.72	41.98
GSMUA_Achr9P00210_001	Banana	plastid	43.84	41.71
TraesCS3B01G183800.2	Wheat	nucleus	29.75	41.3
Zm00001d039280_P005	Maize	mitochondrion, nucleus, plastid	29.94	41.02
TraesCS3D01G164900.3	Wheat	nucleus	29.35	40.76
GSMUA_Achr10P...	Banana	nucleus	37.96	40.76
VIT_05s0077g00850.t01	Wine grape	nucleus	28.77	40.61
HORVU3Hr1G031950.4	Barley	mitochondrion	29.16	40.6
TraesCS3A01G157300.2	Wheat	nucleus	29.16	40.6
Os05t0557600-01	Rice	cytosol	40.31	40.47
TraesCS3D01G164200.1	Wheat	nucleus, plastid	35.62	40.35
TraesCS3B01G183000.1	Wheat	nucleus, plastid	35.62	40.27
EES17914	Sorghum	plastid	36.01	40.0
TraesCS3A01G156300.1	Wheat	nucleus, plastid	35.42	39.87
KXG31481	Sorghum	nucleus	35.62	39.65
Os05t0232500-01	Rice	nucleus, plastid	36.2	39.61
Zm00001d047959_P001	Maize	cytosol	17.22	39.46
HORVU3Hr1G031890.10	Barley	cytosol, nucleus	30.72	39.45
Zm00001d039285_P001	Maize	cytosol, plastid	34.64	39.33
TraesCS5B01G264000.1	Wheat	nucleus	34.64	39.07
EES19929	Sorghum	nucleus	38.55	38.86
TraesCS5D01G272400.1	Wheat	nucleus	34.25	38.63
HORVU3Hr1G031730.4	Barley	nucleus, plastid	36.2	38.54
HORVU1Hr1G029800.11	Barley	plastid	35.62	38.16
TraesCS1A01G129500.2	Wheat	nucleus	36.4	37.73
TraesCS1B01G415500.2	Wheat	nucleus	41.1	37.43
Zm00001d049101_P001	Maize	cytosol	11.35	37.18
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	40.7	37.08
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	40.51	37.03
TraesCS3D01G269000.1	Wheat	nucleus	37.96	36.6
TraesCS3A01G269200.1	Wheat	nucleus	37.96	36.6
KXG33109	Sorghum	nucleus	38.16	36.52
Os01t0232500-01	Rice	nucleus	34.64	36.49
HORVU1Hr1G085630.1	Barley	cytosol, nucleus	41.1	36.27
TraesCS3B01G303300.1	Wheat	nucleus	37.57	36.23
TraesCS1D01G125200.2	Wheat	plastid	36.4	35.7
TraesCS1B01G146400.2	Wheat	plastid	36.2	35.65
HORVU3Hr1G062370.3	Barley	golgi	38.75	33.62
VIT_19s0014g02760.t01	Wine grape	nucleus	49.32	33.6
Os01t0233900-01	Rice	mitochondrion	30.53	33.55
Os01t0229900-01	Rice	mitochondrion	13.5	25.37
VIT_00s0265g00070.t01	Wine grape	cytosol	35.23	19.07
VIT_03s0038g02570.t01	Wine grape	nucleus	32.29	13.64
Os03t0679300-01	Rice	mitochondrion	3.72	11.45

Protein Annotations

EntrezGene:100264294	wikigene:100264294	Gene3D:3.10.110.10	MapMan:35.1	EMBL:AM464149	ProteinID:CAN79081
ProteinID:CAN79081.1	ProteinID:CCB47283	ProteinID:CCB47283.1	UniProt:F6H5D3	EMBL:FN595235	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135
EntrezGene:LOC100264294	wikigene:LOC100264294	PFAM:PF00179	PFscan:PS50127	PANTHER:PTHR44273	PANTHER:PTHR44273:SF5
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00021083F5	ArrayExpress:VIT_12s0028g03630
EnsemblPlantsGene:VIT_12s0028g03630	EnsemblPlants:VIT_12s0028g03630.t01	unigene:Vvi.8135	RefSeq:XP_002274123	RefSeq:XP_002274123.2	SEG:seg

Description

No Description!

Coordinates

chr12:+:4458443..4466936

Molecular Weight (calculated)

56978.2 Da

IEP (calculated)

4.429

GRAVY (calculated)

-0.596

Length

511 amino acids

Sequence
(BLAST)

001: MGDDYASQSS QSSISKKHKQ NEVVLSDGIH IERDEGPTGL SITEEKVVTG GNKGKSKIDC DETWQNQAQV ALANDVRNPT SEAGSEDSPD PLKSFASGSS
101: DLININGFNS DLSYHDDDAI DDDDDDDVSG YDDNDDFLYD DDYLKLQAQF DNVDIPPGVE ASVPWLKDPT PSEKMPAVVD TSPTPSLQGQ CARVGSFSDP
201: GEKETKTAAT SSSTVPAQSG DGNQDDVLGK YLFFKQFDTV EDFSDHHFSR MGFVGEQPPK NWAKKIQEEW KILERDLPET IFVRVYEARM DLLRAVIVGP
301: AGTPYHDGLF VFDVLFPPNY PSVPPMVYYY SGGLRLNPNL YDCGKVCLSL LNTWNGKKTE MWIPGKSTML QVLVSIQGLI LNAKPFFNEP GYENMYVGED
401: GERRSKQYNE DVFILSLKTM VYTIRRPPKH FEDFVVGHFR QRAHDILVAC KAYKEGSQVG SMVKEGTQDV NEHEMSTSHE FKEAVGKMMK TLVTNFIKNG
501: SKDCEQFQVS A

Best Arabidopsis Sequence Match ( AT3G15355.1 )
(BLAST)

001: MEPNVVEIAT PPAASCSRIR TPTKAETPEV IDVEEYDLQN GGVPNGNNVD YKNKGKAIDF DSMSYGDYGE EDEYAVGSPG DDYGYPESSP LSNSLLDPES
101: LIYEDDENYS EQYDFEMEAE PDNYSMYQDL FDGKDIPTGV EVSMDWFPNS ADKESASSSK SSHANNGNNS SKKATKASGI HSQFSSDMET PVAQPWNALP
201: HKAEGVIPNS AYALPQNSKA FQPPYAVHYS ALKTAFSNYL QPQTPDTVLG EAPAPAAGSS GLLPPNTPGF KSNAARFKEE PPILPPDDSR VKRNMEDYLG
301: LYLFFKRFDI VEDFSDHHYA SKGTTSKQHS KDWAKRIQDE WRILEKDLPE MIFVRAYESR MDLLRAVIIG AQGTPYHDGL FFFDIFFPDT YPSTPPIVHY
401: HSGGLRINPN LYNCGKVCLS LLGTWSGNQR EKWIPNTSTM LQVLVSIQGL ILNQKPYFNE PGYERSAGSA HGESTSKAYS ENTFILSLKT MVYTMRRPPK
501: YFEDFAYGHF FSCAHDVLKA CNAYRNGATP GYLVKGAPDV EENSAGMSSL KFRTDVATFV ETVLLKEFIL LGVLGLEPEE EEKTPETIIV AESSKCTRSR
601: SKRDRVSSS

Arabidopsis Description

UBC25Probable ubiquitin-conjugating enzyme E2 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.