Factsheet for VIT_00s0265g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1927g00020.t01	Wine grape	cytosol, nucleus	25.11	98.34
KRH21442	Soybean	nucleus	61.33	63.0
KRH10881	Soybean	nucleus	59.85	61.15
KRH20454	Soybean	cytosol, nucleus, peroxisome	59.43	60.13
KRH50043	Soybean	cytosol	59.0	60.09
PGSC0003DMT400076435	Potato	nucleus	55.61	56.7
Solyc02g078210.2.1	Tomato	cytosol	55.08	56.22
CDY53783	Canola	nucleus	50.32	56.08
Bra021874.1-P	Field mustard	nucleus	50.74	55.38
CDY37693	Canola	nucleus	50.74	55.38
AT2G33770.1	Thale cress	nucleus	50.32	52.37
GSMUA_Achr9P06210_001	Banana	cytosol	49.15	51.9
Os05t0557700-01	Rice	cytosol	44.49	47.95
TraesCS1B01G415800.1	Wheat	cytosol	42.69	47.75
HORVU1Hr1G085570.2	Barley	cytosol	42.69	47.58
TraesCS1A01G388400.1	Wheat	cytosol	42.37	47.45
EES19930	Sorghum	cytosol	43.75	47.42
TraesCS1D01G396300.1	Wheat	nucleus	42.48	46.96
VIT_05s0077g00850.t01	Wine grape	nucleus	15.25	39.78
VIT_12s0028g03630.t01	Wine grape	nucleus	19.07	35.23
GSMUA_Achr9P00220_001	Banana	cytosol	17.9	34.14
VIT_03s0038g02570.t01	Wine grape	nucleus	37.71	29.42
Zm00001d038972_P002	Maize	endoplasmic reticulum, golgi, plastid	42.9	28.12
VIT_19s0014g02760.t01	Wine grape	nucleus	19.49	24.53

Protein Annotations

EntrezGene:100266813	wikigene:100266813	MapMan:25.3.1.2	Gene3D:3.10.110.10	ProteinID:CBI23966	ProteinID:CBI23966.3
UniProt:D7T0D7	EMBL:FN595499	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625
GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135	EntrezGene:LOC100266813	wikigene:LOC100266813	PFAM:PF00179
PFscan:PS50127	PANTHER:PTHR44422	PANTHER:PTHR44422:SF2	SMART:SM00212	SUPFAM:SSF54495	TIGR:TC54835
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001BE2429	ArrayExpress:VIT_00s0265g00070	EnsemblPlantsGene:VIT_00s0265g00070	EnsemblPlants:VIT_00s0265g00070.t01
unigene:Vvi.14922	RefSeq:XP_002267490	RefSeq:XP_002267490.2	RefSeq:XP_010646656.1	RefSeq:XP_019073828.1	SEG:seg

Description

No Description!

Coordinates

chrUn:-:19190787..19195896

Molecular Weight (calculated)

105161.0 Da

IEP (calculated)

4.578

GRAVY (calculated)

-0.326

Length

944 amino acids

Sequence
(BLAST)

001: MDMLLSDSDW ESFSESGSSE DQEDIDSMYG GKAQSILSSL EETIGKIDDF LSFERGFIHG DIVCSVADPS GQMGRVVDVD MLVDLENVYG KVIKDVNSKK
101: LLKIRSISIG DYVVLGPWLG RVSKVVDSVT ILFDDGAKCE VTATDHKKIF PISPDLLEDP QYQYYPGQRV QVRLSTLSKS ARWLCGAWKE NRTDGTVCAV
201: EAGLVSVDWL ASALVGSGLS LPAPPCWQDS KKLTLLSCFS HANWQLGDWC MLPVSDRKGV MEKNCLSVST CEHILGHMKL ERGFKRMNLS FERENIFVMV
301: KIKTKVDVQW QDGSCSVGLD PQSLFPINIV DAHEFWPEQF VLEKGTCDDP NVSSSQRWGV VEVVDAKERI VKVKWKNFAL NEGNDLEEGL MEETVSAYEL
401: VEHPDYSYCL GDFVFRLERN QLVDQADGQN FNNNAIAEMG MGKEIPLKGE TCSKDQNEYS DKYYSSHIGN VVGFKDGGVK VKWATGLTTQ VAPNEIFRID
501: KFEGSSTTPE ENIEELNHEL IEDDNQSSPG KEKDVSDLNI VDKDCTKYPW QSTSSLLPRA VIGFFLSIAA SLFGSPDSAL LSGQLSSSHC SEDENESGTH
601: LKGVLNSCNP CTEEQHIVVD DLQASGETSV KEEIKEIGGD KDLPFSSGSK NPEQFSQFDM VCDCSDHHFV DSAGKGLALS QVKIGWLKKV QQEWSMLEKN
701: LPETIYVRIY EERMDLLRAA IVGPSATPYH DGLFFFDIFL PPEYPHEPPL VHYNSGGLRV NPNLYESGKV CLSLLNTWTG TGTEVWNPGS STILQVLLSL
801: QALVLNEKPY FNEAGYDKQM GRAEGEKNSI SYNENAFIGT CRSILYLLRN PPKHFEAIVE EHFNQCSQHF LLACKAYMEG APVGCAFEHK KTAEESQKGS
901: STGFKIMLAK LFPKLVEAFS ARGIDCSQFV EMEKGICYNW GKQP

Best Arabidopsis Sequence Match ( AT2G33770.1 )
(BLAST)

001: MEMSLTDSDW DSSSDSGSSE HEEVEFSYGG RAQNIFSNLE ETIGKIDEFL SFERGFMYGD IVRSATEPSG QSGRVINIDM FVNLESTHGK IMKEVDTKRL
101: QKLRSISLSD YVINGPWVGR VDKIVERVSV TLDDGTNYEV LVDGQDKLVA IPPNLLEDSQ YSYYPGQRVQ VKLAHAPRST TWLCGTWRGT QVMGTVCTVE
201: AGLVYVDWVA SIVMEGDRNL TAPQALQNPE SLTLLPCVSH ASWQLGDWCI LPGSSHCDIA ERQTPNVAAY NLNECHKTFQ KGFNRNMQNS GLDELFVITK
301: TKMKVAVMWQ DGSCSLGVDS QQLLPVGAVN AHDFWPEQFV VEKETCNSKK WGVVKAVNAK EQTVKVQWTI QVEKEATGCV DEVMEEIVSA YELLEHPDFG
401: FCFSDVVVKL LPEGKFDPNA DTIVATEAKH LLTESDYSGA YFLSSIGVVT GFKNGSVKVK WANGSTSKVA PCEIWKMERS EYSNSSTVSS EGSVQDLSQK
501: ISQSDEASSN HQETGLVKLY SVGESCNENI PECSSFFLPK AAIGFITNLA SSLFGYQGST SVISSHSRCN DSEDQSDSEV LVQETAESYD NSETNSGEVD
601: MTTTMVNIPI EGKGINKTLD STLLENSRNQ VRFRQFDMVN DCSDHHFLSS DKGLAQSQVT KSWVKKVQQE WSNLEANLPN TIYVRVCEER MDLLRAALVG
701: APGTPYHDGL FFFDIMLPPQ YPHEPPMVHY HSGGMRLNPN LYESGRVCLS LLNTWSGSGT EVWNAGSSSI LQLLLSFQAL VLNEKPYFNE AGYDKQLGRA
801: EGEKNSVSYN ENAFLITCKS MISMLRKPPK HFEMLVKDHF THRAQHVLAA CKAYMEGVPV GSSANLQGNS TTNSTGFKIM LSKLYPKLLE AFSEIGVDCV
901: QEIGPES

Arabidopsis Description

UBC24Probable ubiquitin-conjugating enzyme E2 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.