Factsheet for Zm00001d038972_P002

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid

Predictor Summary:

mitochondrion 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plastid
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19930	Sorghum	cytosol	56.11	92.77
TraesCS1A01G388400.1	Wheat	cytosol	46.53	79.48
HORVU1Hr1G085570.2	Barley	cytosol	46.53	79.1
TraesCS1D01G396300.1	Wheat	nucleus	46.74	78.81
TraesCS1B01G415800.1	Wheat	cytosol	45.9	78.32
Os05t0557700-01	Rice	cytosol	46.18	75.91
VIT_00s1927g00020.t01	Wine grape	cytosol, nucleus	10.9	65.15
GSMUA_Achr9P06210_001	Banana	cytosol	29.86	48.1
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	6.32	45.05
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	6.18	44.06
CDY53783	Canola	nucleus	25.76	43.8
Zm00001d009007_P001	Maize	cytosol	7.43	43.67
CDY37693	Canola	nucleus	25.83	43.01
VIT_00s0265g00070.t01	Wine grape	cytosol	28.12	42.9
Bra021874.1-P	Field mustard	nucleus	25.76	42.89
KRH20454	Soybean	cytosol, nucleus, peroxisome	27.22	42.02
KRH50043	Soybean	cytosol	26.74	41.53
KRH21442	Soybean	nucleus	26.46	41.46
PGSC0003DMT400076435	Potato	nucleus	26.53	41.25
Solyc02g078210.2.1	Tomato	cytosol	26.39	41.08
KRH10881	Soybean	nucleus	26.18	40.8
AT2G33770.1	Thale cress	nucleus	25.69	40.79
Zm00001d047959_P001	Maize	cytosol	6.11	39.46
Zm00001d039280_P005	Maize	mitochondrion, nucleus, plastid	10.07	38.87
Zm00001d049101_P001	Maize	cytosol	3.96	36.54
Zm00001d009513_P003	Maize	cytosol	9.17	33.25
Zm00001d039285_P001	Maize	cytosol, plastid	10.21	32.67
GSMUA_Achr9P00220_001	Banana	cytosol	11.04	32.12
Zm00001d008520_P001	Maize	nucleus	23.12	30.22
Zm00001d040036_P022	Maize	nucleus	22.64	29.66

Protein Annotations

EntrezGene:100502171	EntrezGene:103630718	MapMan:25.3.1.2	Gene3D:3.10.110.10	UniProt:A0A1D6MC51	ProteinID:AQK88332.1
ncoils:Coil	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000608	InterPro:IPR016135
PFAM:PF00179	PFscan:PS50127	PANTHER:PTHR44422	PANTHER:PTHR44422:SF2	SMART:SM00212	SUPFAM:SSF54495
TMHMM:TMhelix	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0008435344	EnsemblPlantsGene:Zm00001d038972	EnsemblPlants:Zm00001d038972_P002
EnsemblPlants:Zm00001d038972_T002	SEG:seg	:	:	:	:

Description

Probable ubiquitin-conjugating enzyme E2 24

Coordinates

chr6:-:168004770..168021297

Molecular Weight (calculated)

160379.0 Da

IEP (calculated)

4.758

GRAVY (calculated)

-0.267

Length

1440 amino acids

Sequence
(BLAST)

0001: MAAGWDCDRN TWPAGILTFW TSICILFLVL EITTLPKQPH LTKKVGFEIM DLFTIDSDSE SYTGTSDSED QECEFTYSDH AQNILSSLDE SIGKIDNFLT
0101: FERGFLHGDI VCPVSDPSGQ LGRVVGVAMF VDLETSSGDI IKDVNSKKLS RVRSFVSGDC VVMGPWIGRV IRAFDLVTLL FSDGAKCEIL LRDSDVLKPI
0201: PPVLFEDAPY FYYPGQRVRI VDPSVSKSAT WLCGSWRPSR DDGIVSHVDV GLVHVNWITS VTNVWGDKSS SPPNIQDPKK LTLLSCFPYA NWQLGDWCAL
0301: MTDNNGCLWM DSGKSCILSE DQKCDSHAHM YFESYGSDCS QTFVVAKTKS TVDVLWQNGT VSLGLEPQAL LPVSTLGDHD FWPGQFVLEK LTVEDAARCP
0401: RTAIVSDVDA LERTVNVKWI GPAHSDIVSY GSDPAVETVS VYELVEHPDF SFCTGEVVIR SAMNIDKSEA DPTNGSLASK ESLVTSSGFL SCTGNVLGYK
0501: DNGIEVQWAN GVISKVQHFE IIGLDKLLDN SSVESMNEEH TIGDSLDEAE QEELNHEIAL ESTEDCTGSL CKATAFLFPK TAFDFLTNVA ASLFGIHGSP
0601: SPSSVLVDPR YEIVKMAEMQ PCAEETPKEE QIVKFVAQID KPILSSEDAI SKRFDVVTDC LDHHFVKENG HESVMQLLKL SLSLFSSNNH WCERGIMCND
0701: DYFLFLGYKR LVEEDGIHVR VYEERMDLLR ACIVGAPGTP YHDNLFFFDI FFPPDYPHEP PSVHYHSGGL RLNPNLYESG KVCLSLLKTW TGTGNEVWNA
0801: ESSTVLQLLL SLQALVLNEK PYFNEAGYDK FVGKADGEKN SITYNENAFL LSCKSMMYVL RKPPKHFETL VKEHFTCRAP HILDACEAYL GGDLVGHAHD
0901: KAYVAEDGNK NCSTGFKIML GKLLPKLVTA FCEAGITSDR NCLCAGSSSF DDPDVVEVSP ATAAAAGWAS GHHKRKRSQV VPQEVIEIDD DDPDGVILIG
1001: DKAQVEKNKQ TAVCPMDCSK HAKSGWVQDI PGPSTYASKY TSSWVDLKVF QDEAVYNYSD GYPFDGFEED YAYDEDEFED DGYDTPLIES EFQFSLSAKF
1101: DNFNVLHGLE ASLPWKHKTA IEIANKTKPS KAVDDKIEEK YKAFKRFDTV DDHSDHYYSK PESRKVQAVK KPSKDWVKRI QHEWKVLEKD LPETIFVRAY
1201: EDRMDLLRAV IMGPAGTPYH DGLFFFDIYF PPQYPNIPPM VNYRAGGLRL NPNLYACGKV CLSLLNTWTG SGCEKWNPAN STMLQVLVSI QALVLNAKPY
1301: FNEPGYAMHA NTAHGEKKSL TYNEDTFLHS CRTMLYSLRN PPKNFEDFVA GHFRKYGRNI LVACRAYLEG AQVGCLSGDG VQDVDEGDKS CSVRFKQSLK
1401: RLHEELLAEF TAKGADCGKF LSEKARSGAS TSAADTTLRL

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.