Factsheet for VIT_00s1927g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0077g00850.t01	Wine grape	nucleus	50.21	33.43
VIT_00s0265g00070.t01	Wine grape	cytosol	98.34	25.11
VIT_12s0028g03630.t01	Wine grape	nucleus	51.45	24.27
GSMUA_Achr9P00220_001	Banana	cytosol	43.15	21.01
KRH21442	Soybean	nucleus	78.84	20.67
KRH20454	Soybean	cytosol, nucleus, peroxisome	78.01	20.15
KRH10881	Soybean	nucleus	77.18	20.13
CDY53783	Canola	nucleus	70.12	19.95
Bra021874.1-P	Field mustard	nucleus	70.54	19.65
CDY37693	Canola	nucleus	70.12	19.54
KRH50043	Soybean	cytosol	75.1	19.53
Solyc02g078210.2.1	Tomato	cytosol	73.03	19.03
PGSC0003DMT400076435	Potato	nucleus	73.03	19.01
GSMUA_Achr9P06210_001	Banana	cytosol	68.88	18.57
TraesCS1B01G415800.1	Wheat	cytosol	63.49	18.13
AT2G33770.1	Thale cress	nucleus	68.05	18.08
TraesCS1A01G388400.1	Wheat	cytosol	63.07	18.03
HORVU1Hr1G085570.2	Barley	cytosol	63.07	17.95
TraesCS1D01G396300.1	Wheat	nucleus	63.49	17.92
EES19930	Sorghum	cytosol	64.32	17.8
Os05t0557700-01	Rice	cytosol	63.9	17.58
VIT_19s0014g02760.t01	Wine grape	nucleus	52.7	16.93
VIT_03s0038g02570.t01	Wine grape	nucleus	56.85	11.32
Zm00001d038972_P002	Maize	endoplasmic reticulum, golgi, plastid	65.15	10.9

Protein Annotations

EntrezGene:100853336	wikigene:100853336	Gene3D:3.10.110.10	MapMan:35.1	ProteinID:CCB50231	ProteinID:CCB50231.1
UniProt:F6HDD6	EMBL:FN595679	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625
GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135	EntrezGene:LOC100853336	wikigene:LOC100853336	PFAM:PF00179
PFscan:PS50127	PANTHER:PTHR44422	PANTHER:PTHR44422:SF2	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002107F1D	ArrayExpress:VIT_00s1927g00020	EnsemblPlantsGene:VIT_00s1927g00020	EnsemblPlants:VIT_00s1927g00020.t01	RefSeq:XP_003635612
RefSeq:XP_003635612.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:40716700..40718314

Molecular Weight (calculated)

27156.5 Da

IEP (calculated)

6.241

GRAVY (calculated)

-0.233

Length

241 amino acids

Sequence
(BLAST)

001: TIYVRIYEER MDLLRAAIVG PSATPYHDGL FFFDIFLPPE YPHEPPLVHY NSGGLRVNPN LYESGKVCLS LLNTWTGTGT EVWNPGSSTI LQVLLSLQAL
101: VLNEKPYFNE AGYDKQMGRA EGEKNSISYN ENAFIGTCRS ILYLLRNPPK HFEALVEEHF NQCSQHFLLA CKAYMEGAPV GCAFEQKKTA EESQKGSSTG
201: FKIMLGKLFP KLVEAFFARG IDCSQFVEME KGICYNWGKQ P

Best Arabidopsis Sequence Match ( AT2G33770.1 )
(BLAST)

001: MEMSLTDSDW DSSSDSGSSE HEEVEFSYGG RAQNIFSNLE ETIGKIDEFL SFERGFMYGD IVRSATEPSG QSGRVINIDM FVNLESTHGK IMKEVDTKRL
101: QKLRSISLSD YVINGPWVGR VDKIVERVSV TLDDGTNYEV LVDGQDKLVA IPPNLLEDSQ YSYYPGQRVQ VKLAHAPRST TWLCGTWRGT QVMGTVCTVE
201: AGLVYVDWVA SIVMEGDRNL TAPQALQNPE SLTLLPCVSH ASWQLGDWCI LPGSSHCDIA ERQTPNVAAY NLNECHKTFQ KGFNRNMQNS GLDELFVITK
301: TKMKVAVMWQ DGSCSLGVDS QQLLPVGAVN AHDFWPEQFV VEKETCNSKK WGVVKAVNAK EQTVKVQWTI QVEKEATGCV DEVMEEIVSA YELLEHPDFG
401: FCFSDVVVKL LPEGKFDPNA DTIVATEAKH LLTESDYSGA YFLSSIGVVT GFKNGSVKVK WANGSTSKVA PCEIWKMERS EYSNSSTVSS EGSVQDLSQK
501: ISQSDEASSN HQETGLVKLY SVGESCNENI PECSSFFLPK AAIGFITNLA SSLFGYQGST SVISSHSRCN DSEDQSDSEV LVQETAESYD NSETNSGEVD
601: MTTTMVNIPI EGKGINKTLD STLLENSRNQ VRFRQFDMVN DCSDHHFLSS DKGLAQSQVT KSWVKKVQQE WSNLEANLPN TIYVRVCEER MDLLRAALVG
701: APGTPYHDGL FFFDIMLPPQ YPHEPPMVHY HSGGMRLNPN LYESGRVCLS LLNTWSGSGT EVWNAGSSSI LQLLLSFQAL VLNEKPYFNE AGYDKQLGRA
801: EGEKNSVSYN ENAFLITCKS MISMLRKPPK HFEMLVKDHF THRAQHVLAA CKAYMEGVPV GSSANLQGNS TTNSTGFKIM LSKLYPKLLE AFSEIGVDCV
901: QEIGPES

Arabidopsis Description

UBC24Probable ubiquitin-conjugating enzyme E2 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.