Factsheet for PGSC0003DMT400039746

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g013820.1.1	Tomato	nucleus	92.14	90.03
CDY30673	Canola	nucleus	15.31	61.33
HORVU3Hr1G109730.1	Barley	cytosol	12.97	58.39
Bra036393.1-P	Field mustard	cytosol, extracellular	6.62	56.47
CDY51802	Canola	cytosol	15.31	54.15
HORVU1Hr1G090980.2	Barley	cytosol	14.34	52.0
KRH26136	Soybean	cytosol	21.52	51.32
GSMUA_Achr7P25120_001	Banana	cytosol	20.97	50.84
PGSC0003DMT400064440	Potato	nucleus	50.34	50.14
Zm00001d009007_P001	Maize	cytosol	16.69	49.39
Bra041020.1-P	Field mustard	plastid	22.07	48.63
AT1G53023.1	Thale cress	cytosol	20.97	48.1
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	21.38	47.69
CDY25884	Canola	plastid	21.66	47.43
CDY25883	Canola	cytosol	18.48	47.35
Os01t0677500-00	Rice	cytosol	22.21	46.67
KRH26135	Soybean	cytosol	24.69	46.02
TraesCS5D01G272300.1	Wheat	cytosol, nucleus, plastid	21.24	45.03
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	12.28	44.06
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	12.28	44.06
Os09t0294300-01	Rice	nucleus	26.07	43.65
PGSC0003DMT400047166	Potato	nucleus	27.17	42.64
GSMUA_Achr6P22670_001	Banana	cytosol	26.48	41.92
KXG31477	Sorghum	mitochondrion, plastid	21.1	41.58
CDX71178	Canola	cytosol	24.55	41.3
HORVU2Hr1G062530.3	Barley	cytosol	7.31	40.77
Zm00001d047959_P001	Maize	cytosol	12.41	40.36
CDX82439	Canola	cytosol	25.52	40.3
PGSC0003DMT400011956	Potato	cytosol	17.79	40.19
Zm00001d009513_P003	Maize	cytosol	21.93	40.05
HORVU5Hr1G000190.3	Barley	cytosol	7.17	40.0
CDY55875	Canola	nucleus	23.45	39.81
Zm00001d039280_P005	Maize	mitochondrion, nucleus, plastid	20.41	39.68
Zm00001d039285_P001	Maize	cytosol, plastid	24.55	39.56
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	20.55	39.42
Bra030965.1-P	Field mustard	nucleus	25.52	39.36
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	20.28	39.3
GSMUA_Achr10P...	Banana	nucleus	25.79	39.29
Os05t0557600-01	Rice	cytosol	27.45	39.1
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	20.28	38.99
TraesCS3B01G183000.1	Wheat	nucleus, plastid	24.28	38.94
CDY24125	Canola	cytosol	26.07	38.89
TraesCS3D01G164200.1	Wheat	nucleus, plastid	24.14	38.8
CDX98552	Canola	cytosol	29.1	38.79
EES17914	Sorghum	plastid	24.55	38.7
EES19929	Sorghum	nucleus	27.03	38.66
CDY47562	Canola	cytosol	25.66	38.59
TraesCS3A01G156300.1	Wheat	nucleus, plastid	24.14	38.55
HORVU3Hr1G031950.4	Barley	mitochondrion	19.45	38.42
TraesCS3A01G157300.2	Wheat	nucleus	19.45	38.42
GSMUA_Achr9P00210_001	Banana	plastid	28.41	38.36
KXG31481	Sorghum	nucleus	24.28	38.34
CDY02528	Canola	cytosol	25.38	38.33
TraesCS3D01G164900.3	Wheat	nucleus	19.45	38.32
Bra019007.1-P	Field mustard	cytosol	26.21	38.23
CDX97660	Canola	cytosol	28.97	38.04
TraesCS3B01G183800.2	Wheat	nucleus	19.31	38.04
Os01t0232500-01	Rice	nucleus	25.38	37.94
Os05t0232500-01	Rice	nucleus, plastid	24.41	37.9
Bra027252.1-P	Field mustard	cytosol	28.69	37.82
HORVU3Hr1G031730.4	Barley	nucleus, plastid	24.83	37.5
Bra001591.1-P	Field mustard	nucleus	27.86	37.48
CDX75824	Canola	cytosol	24.14	37.47
TraesCS5D01G272400.1	Wheat	nucleus	23.31	37.31
CDY26018	Canola	cytosol	26.07	37.2
TraesCS1B01G415500.2	Wheat	nucleus	28.55	36.9
KXG33109	Sorghum	nucleus	27.17	36.89
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	28.41	36.72
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	28.28	36.67
CDY25886	Canola	cytosol	23.45	36.56
Bra040814.1-P	Field mustard	cytosol	23.45	36.56
HORVU3Hr1G031890.10	Barley	cytosol, nucleus	20.0	36.43
TraesCS1A01G129500.2	Wheat	nucleus	24.69	36.31
HORVU1Hr1G029800.11	Barley	plastid	23.86	36.27
TraesCS5B01G264000.1	Wheat	nucleus	22.62	36.2
Zm00001d049101_P001	Maize	cytosol	7.72	35.9
TraesCS3D01G269000.1	Wheat	nucleus	26.07	35.66
TraesCS3A01G269200.1	Wheat	nucleus	25.93	35.47
TraesCS3B01G303300.1	Wheat	nucleus	25.93	35.47
HORVU1Hr1G085630.1	Barley	cytosol, nucleus	28.0	35.06
Bra021105.1-P	Field mustard	nucleus	28.83	35.01
CDY20117	Canola	nucleus	28.83	34.95
KRH27240	Soybean	cytosol	33.66	34.66
AT1G53025.2	Thale cress	nucleus	26.62	34.65
VIT_19s0014g02760.t01	Wine grape	nucleus	35.72	34.53
AT3G15355.1	Thale cress	nucleus	28.83	34.32
TraesCS1B01G146400.2	Wheat	plastid	24.55	34.3
TraesCS1D01G125200.2	Wheat	plastid	24.55	34.17
KRH22096	Soybean	cytosol	33.66	33.75
Os01t0233900-01	Rice	mitochondrion	21.24	33.12
CDY21838	Canola	cytosol	29.24	32.67
HORVU3Hr1G062370.3	Barley	golgi	26.34	32.43
PGSC0003DMT400023282	Potato	cytosol	12.41	31.69
Os01t0229900-01	Rice	mitochondrion	10.07	26.84
KRH55293	Soybean	cytosol, peroxisome, plastid	29.38	24.51
PGSC0003DMT400076435	Potato	nucleus	26.07	20.41
PGSC0003DMT400015781	Potato	nucleus	23.86	14.91
Os03t0679300-01	Rice	mitochondrion	2.9	12.65

Protein Annotations

EnsemblPlants:PGSC0003DMT400039746	EnsemblPlantsGene:PGSC0003DMG400015361	EntrezGene:102587645	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF5	PFAM:PF00179	PFscan:PS50127
PGSC:PGSC0003DMG400015361	RefSeq:XP_006358979.1	SEG:seg	SMART:SM00212	SUPFAM:SSF54495	UniParc:UPI000296B9DD
UniProt:M1B8P4	MapMan:35.1	:	:	:	:

Description

Ubiquitin conjugating enzyme [Source:PGSC_GENE;Acc:PGSC0003DMG400015361]

Coordinates

chr12:+:617224..623500

Molecular Weight (calculated)

79894.1 Da

IEP (calculated)

6.934

GRAVY (calculated)

-0.361

Length

725 amino acids

Sequence
(BLAST)

001: MELPPSRCIS QNSKKRVFPG GSSTDAQVAE VSPPIAWISK SESAKQKEPI HHGDVDMKGG DNDVMFIDGN TGSRGKGKDF LELSLGYGGS EYSVGPSQVQ
101: SSKKHCPSES GEVPANLFYE DDPSMDMYFN DLAHHDYAIL QSHFDHMDTP PGVEVPIPWM SGFAKAKLTS TTTSTSSTSK ALNSPFGRET PEVLKYPSTS
201: FYDLNHVFKP TPFELSSSSL GPAVVKGKFS AKANSKGICF KEQNGSTNVS PGVEKSLNIQ GSRLRRKIHL SPGTVSHSWH TPSIPGGAPF PTAHFVPPPM
301: PSWMNFPPNM PTAQASSGFM LAPGAMNPLP LHQVHPGFML APGDMNSLPL EQVHPGYILP PDAMNYFLPE QLSTGPVLAP GAMHYFHQEM DHELWTHGLH
401: NSASLSLQCE SAPTKEQHGD LGESLKNFRL FKKFDTVQDH SGNYFSGLAS HDNQASKGCA KRIQEEWKIL EKDLPDTIFV RVYETRMDLL RAVIIGADGT
501: PYHDGLFFFD VYFPSNYPNV PPHVHYHSFG LRINPNLYEC GKVCLSLLNT WGGRGKEKWI PGESTMLQVL VSIQGLILNA KPYFNEPGYA KMNGSAIGER
601: NSLRYNEHTC IFNLKTMVFC MRRPPQHFED FVIGHYFQSC QDILVACKAY MEGARVGSLV RGCVLEAGGD KGCSRSFKAM LAGFIEVLVE AFKKIGCEDC
701: DKFLPLAEKA STRVTPVKME TADHI

Best Arabidopsis Sequence Match ( AT3G15355.1 )
(BLAST)

001: MEPNVVEIAT PPAASCSRIR TPTKAETPEV IDVEEYDLQN GGVPNGNNVD YKNKGKAIDF DSMSYGDYGE EDEYAVGSPG DDYGYPESSP LSNSLLDPES
101: LIYEDDENYS EQYDFEMEAE PDNYSMYQDL FDGKDIPTGV EVSMDWFPNS ADKESASSSK SSHANNGNNS SKKATKASGI HSQFSSDMET PVAQPWNALP
201: HKAEGVIPNS AYALPQNSKA FQPPYAVHYS ALKTAFSNYL QPQTPDTVLG EAPAPAAGSS GLLPPNTPGF KSNAARFKEE PPILPPDDSR VKRNMEDYLG
301: LYLFFKRFDI VEDFSDHHYA SKGTTSKQHS KDWAKRIQDE WRILEKDLPE MIFVRAYESR MDLLRAVIIG AQGTPYHDGL FFFDIFFPDT YPSTPPIVHY
401: HSGGLRINPN LYNCGKVCLS LLGTWSGNQR EKWIPNTSTM LQVLVSIQGL ILNQKPYFNE PGYERSAGSA HGESTSKAYS ENTFILSLKT MVYTMRRPPK
501: YFEDFAYGHF FSCAHDVLKA CNAYRNGATP GYLVKGAPDV EENSAGMSSL KFRTDVATFV ETVLLKEFIL LGVLGLEPEE EEKTPETIIV AESSKCTRSR
601: SKRDRVSSS

Arabidopsis Description

UBC25Probable ubiquitin-conjugating enzyme E2 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.