Factsheet for Solyc12g013820.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
plasma membrane 1
mitochondrion 2
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039746	Potato	nucleus	90.03	92.14
CDY30673	Canola	nucleus	15.5	63.54
Bra036393.1-P	Field mustard	cytosol, extracellular	6.87	60.0
HORVU3Hr1G109730.1	Barley	cytosol	12.8	59.01
CDY51802	Canola	cytosol	14.82	53.66
Solyc10g007000.2.1	Tomato	cytosol	47.44	52.77
HORVU1Hr1G090980.2	Barley	cytosol	14.15	52.5
KRH26136	Soybean	cytosol	21.16	51.64
GSMUA_Achr7P25120_001	Banana	cytosol	20.62	51.17
Bra041020.1-P	Field mustard	plastid	22.1	49.85
Zm00001d009007_P001	Maize	cytosol	16.44	49.8
AT1G53023.1	Thale cress	cytosol	20.62	48.42
CDY25884	Canola	plastid	21.56	48.34
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	21.16	48.31
CDY25883	Canola	cytosol	18.06	47.35
Os01t0677500-00	Rice	cytosol	21.56	46.38
KRH26135	Soybean	cytosol	24.26	46.27
TraesCS5D01G272300.1	Wheat	cytosol, nucleus, plastid	20.62	44.74
Os09t0294300-01	Rice	nucleus	25.2	43.19
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	11.73	43.07
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	11.73	43.07
GSMUA_Achr6P22670_001	Banana	cytosol	26.28	42.58
Solyc07g053960.2.1	Tomato	nucleus	26.28	42.12
CDX71178	Canola	cytosol	24.12	41.53
KXG31477	Sorghum	mitochondrion, plastid	20.35	41.03
CDX82439	Canola	cytosol	25.34	40.96
HORVU2Hr1G062530.3	Barley	cytosol	7.14	40.77
CDY55875	Canola	nucleus	23.32	40.52
HORVU5Hr1G000190.3	Barley	cytosol	7.01	40.0
Zm00001d009513_P003	Maize	cytosol	21.29	39.8
Zm00001d039285_P001	Maize	cytosol, plastid	23.99	39.56
Zm00001d047959_P001	Maize	cytosol	11.86	39.46
Bra030965.1-P	Field mustard	nucleus	24.93	39.36
CDY24125	Canola	cytosol	25.74	39.3
GSMUA_Achr10P...	Banana	nucleus	25.2	39.29
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	19.95	39.15
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	19.68	39.04
CDX98552	Canola	cytosol	28.57	38.97
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	19.68	38.73
Os05t0557600-01	Rice	cytosol	26.55	38.7
Bra019007.1-P	Field mustard	cytosol	25.88	38.63
Zm00001d039280_P005	Maize	mitochondrion, nucleus, plastid	19.41	38.61
CDY47562	Canola	cytosol	25.07	38.59
TraesCS3D01G164200.1	Wheat	nucleus, plastid	23.45	38.58
TraesCS3B01G183000.1	Wheat	nucleus, plastid	23.45	38.5
GSMUA_Achr9P00210_001	Banana	plastid	27.76	38.36
CDY02528	Canola	cytosol	24.8	38.33
CDX75824	Canola	cytosol	24.12	38.33
CDX97660	Canola	cytosol	28.44	38.22
Bra001591.1-P	Field mustard	nucleus	27.76	38.22
HORVU3Hr1G031950.4	Barley	mitochondrion	18.87	38.15
TraesCS3A01G157300.2	Wheat	nucleus	18.87	38.15
KXG31481	Sorghum	nucleus	23.58	38.13
TraesCS3A01G156300.1	Wheat	nucleus, plastid	23.32	38.11
EES17914	Sorghum	plastid	23.58	38.04
TraesCS3D01G164900.3	Wheat	nucleus	18.87	38.04
Bra027252.1-P	Field mustard	cytosol	28.17	38.0
EES19929	Sorghum	nucleus	25.88	37.87
TraesCS3B01G183800.2	Wheat	nucleus	18.73	37.77
Os01t0232500-01	Rice	nucleus	24.66	37.73
CDY26018	Canola	cytosol	25.74	37.6
Os05t0232500-01	Rice	nucleus, plastid	23.58	37.47
CDY25886	Canola	cytosol	23.32	37.2
Bra040814.1-P	Field mustard	cytosol	23.32	37.2
TraesCS5D01G272400.1	Wheat	nucleus	22.64	37.09
TraesCS1A01G129500.2	Wheat	nucleus	24.39	36.71
HORVU1Hr1G029800.11	Barley	plastid	23.58	36.69
HORVU3Hr1G031730.4	Barley	nucleus, plastid	23.72	36.67
TraesCS1B01G415500.2	Wheat	nucleus	27.63	36.54
KXG33109	Sorghum	nucleus	26.28	36.52
HORVU3Hr1G031890.10	Barley	cytosol, nucleus	19.54	36.43
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	27.49	36.36
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	27.36	36.31
TraesCS5B01G264000.1	Wheat	nucleus	22.1	36.2
TraesCS3D01G269000.1	Wheat	nucleus	25.61	35.85
TraesCS3A01G269200.1	Wheat	nucleus	25.47	35.66
TraesCS3B01G303300.1	Wheat	nucleus	25.47	35.66
Bra021105.1-P	Field mustard	nucleus	28.57	35.51
CDY20117	Canola	nucleus	28.44	35.28
Zm00001d049101_P001	Maize	cytosol	7.41	35.26
AT1G53025.2	Thale cress	nucleus	26.28	35.01
HORVU1Hr1G085630.1	Barley	cytosol, nucleus	27.09	34.72
KRH27240	Soybean	cytosol	32.88	34.66
AT3G15355.1	Thale cress	nucleus	28.17	34.32
TraesCS1B01G146400.2	Wheat	plastid	23.99	34.3
VIT_19s0014g02760.t01	Wine grape	nucleus	34.64	34.27
TraesCS1D01G125200.2	Wheat	plastid	23.99	34.17
KRH22096	Soybean	cytosol	32.75	33.61
CDY21838	Canola	cytosol	28.84	32.97
Os01t0233900-01	Rice	mitochondrion	20.62	32.9
HORVU3Hr1G062370.3	Barley	golgi	25.88	32.6
Solyc01g079290.1.1	Tomato	cytosol	12.13	31.69
Os01t0229900-01	Rice	mitochondrion	9.57	26.1
KRH55293	Soybean	cytosol, peroxisome, plastid	28.44	24.28
Solyc02g078210.2.1	Tomato	cytosol	25.47	20.43
Solyc01g111680.2.1	Tomato	nucleus	22.51	16.83
Os03t0679300-01	Rice	mitochondrion	2.96	13.25

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625
GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135	UniProt:K4DCR7	PFAM:PF00179	PFscan:PS50127
PANTHER:PTHR44273	PANTHER:PTHR44273:SF5	SMART:SM00212	SUPFAM:SSF54495	EnsemblPlantsGene:Solyc12g013820.1	EnsemblPlants:Solyc12g013820.1.1
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000276A4BC	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:4603477..4609783

Molecular Weight (calculated)

81450.1 Da

IEP (calculated)

7.062

GRAVY (calculated)

-0.324

Length

742 amino acids

Sequence
(BLAST)

001: MELPPSRYFS QNSKKRVFPG GSSTNVQVPE VSSTIARISK SENAKQKEPI HHGDVDMKGG DNDVMFIDGN TGSRGKGKDF LELSLGYGDS AYSVGPSQVQ
101: SSKKHCPSES GEVPANLFYE DNPSIDMYFS ELANYDYAIL QSHFDHMDTP PGVEVPIPWM SGFAKAKMAS ATTSTSSTSK ALSSPFGRET PEVLKYPSTS
201: IYDLNHIFKP TPVELSSSSL GPAVVEGKFS AKANSKGICF KEQNGSTNVS PGVEKSLNVQ GSHLRRKIHL SPGTVSQSWH TPSIPGGVPF PTAHFVPPPM
301: PSWMNLPPNM PTAQASSGFM LAPGAMNPLP LHQVHPGFML APGDMNLLPL HQVHPGFMLA TGDMISLPLE QVHPGYIIPP DTMNYFLPEL LSTGPVLAPG
401: AMHYFHQEMD HELWTHGPHN SASLSLQCES APSKEQHGNL GESLKNFRLF KKFDTVQDHS GHYFSGLASH DNLASKSCAK RILEEWKILE KDLPDTIFVR
501: VYETRMDLLR AVIIGADGTP YHDGLFFFDV YFPSNYPNVP PHVHYHSFGL RINPNLYECG KVCLSLLNTW DGRGKEKWIP GESTMLQVLV SIQGLILNAK
601: PYFNEPGYAR MNGSASGERN SLRYNENTCI FNLKTMVYCM RRPPQHFEDF VIGHYFQSCQ DILVACKAYM EGARVGSLVR GCVLGDGGKG GDKGGSRSFK
701: AMLAGFIGVL VEAFKKIGCE DCDKFLPLAE KASTRATPVK ID

Best Arabidopsis Sequence Match ( AT3G15355.1 )
(BLAST)

001: MEPNVVEIAT PPAASCSRIR TPTKAETPEV IDVEEYDLQN GGVPNGNNVD YKNKGKAIDF DSMSYGDYGE EDEYAVGSPG DDYGYPESSP LSNSLLDPES
101: LIYEDDENYS EQYDFEMEAE PDNYSMYQDL FDGKDIPTGV EVSMDWFPNS ADKESASSSK SSHANNGNNS SKKATKASGI HSQFSSDMET PVAQPWNALP
201: HKAEGVIPNS AYALPQNSKA FQPPYAVHYS ALKTAFSNYL QPQTPDTVLG EAPAPAAGSS GLLPPNTPGF KSNAARFKEE PPILPPDDSR VKRNMEDYLG
301: LYLFFKRFDI VEDFSDHHYA SKGTTSKQHS KDWAKRIQDE WRILEKDLPE MIFVRAYESR MDLLRAVIIG AQGTPYHDGL FFFDIFFPDT YPSTPPIVHY
401: HSGGLRINPN LYNCGKVCLS LLGTWSGNQR EKWIPNTSTM LQVLVSIQGL ILNQKPYFNE PGYERSAGSA HGESTSKAYS ENTFILSLKT MVYTMRRPPK
501: YFEDFAYGHF FSCAHDVLKA CNAYRNGATP GYLVKGAPDV EENSAGMSSL KFRTDVATFV ETVLLKEFIL LGVLGLEPEE EEKTPETIIV AESSKCTRSR
601: SKRDRVSSS

Arabidopsis Description

UBC25Probable ubiquitin-conjugating enzyme E2 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.