Factsheet for Solyc01g111680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015781	Potato	nucleus	97.68	83.53
KRG90672	Soybean	nucleus	68.95	60.85
CDX89761	Canola	nucleus	60.99	57.78
VIT_03s0038g02570.t01	Wine grape	nucleus	69.86	57.27
AT2G16920.1	Thale cress	nucleus	62.9	56.62
CDX72600	Canola	cytosol	6.75	55.83
GSMUA_Achr1P26360_001	Banana	nucleus	52.42	52.74
CDY42703	Canola	cytosol, mitochondrion, nucleus	32.46	47.92
CDY02226	Canola	endoplasmic reticulum, extracellular	57.96	47.44
Bra013040.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	58.47	46.66
Os01t0125900-01	Rice	extracellular, plasma membrane	49.7	46.38
Zm00001d008520_P001	Maize	nucleus	51.11	46.01
EES02568	Sorghum	nucleus	51.21	45.93
Bra017778.1-P	Field mustard	cytosol	41.13	45.59
Zm00001d040036_P022	Maize	nucleus	50.1	45.22
TraesCS3B01G034500.5	Wheat	nucleus	50.1	44.61
TraesCS3A01G047700.3	Wheat	nucleus	50.0	44.56
TraesCS3D01G032000.4	Wheat	nucleus	49.9	44.47
HORVU3Hr1G004520.2	Barley	nucleus	49.4	44.46
GSMUA_Achr8P34010_001	Banana	cytosol	45.87	44.43
Solyc02g078210.2.1	Tomato	cytosol	33.97	36.43
Solyc07g053960.2.1	Tomato	nucleus	16.83	36.07
Solyc01g079290.1.1	Tomato	cytosol	8.37	29.23
Solyc10g007000.2.1	Tomato	cytosol	18.25	27.14
Solyc12g013820.1.1	Tomato	nucleus	16.83	22.51

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031625	GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135	UniProt:K4B430	EMBL:KY246915
PFAM:PF00179	PFscan:PS50127	PANTHER:PTHR44422	PANTHER:PTHR44422:SF1	SMART:SM00212	SUPFAM:SSF54495
EnsemblPlantsGene:Solyc01g111680.2	EnsemblPlants:Solyc01g111680.2.1	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002767716	SEG:seg

Description

Probable ubiquitin-conjugating enzyme E2 23 [Source:Projected from Arabidopsis thaliana (AT2G16920) UniProtKB/Swiss-Prot;Acc:Q9ZVX1]

Coordinates

chr1:-:97871544..97878437

Molecular Weight (calculated)

109982.0 Da

IEP (calculated)

4.403

GRAVY (calculated)

-0.443

Length

992 amino acids

Sequence
(BLAST)

001: MDESESTESI NNVIVVDRGF LHGDYVAAAS DPTGQVGLVV DINISVDLLA HDGSIFKDVS SRELKRVRGF TVGDYVVLGP WLGRIDDVFD NVTVMFDDGS
101: VCKVMKADPL RLKPVGRDGL EDGHFPFYPG QRVKASSSSV FKNSRWLSGS WKANRLEGTV TKVTVGSVFI YWIASAGYGP DSSTAPAEEQ NPKNLKLMSC
201: FSHAIWQLGD WCLLPSSFAL DKQLSKLQLS DSTKTVSESS QPLTDGDSEV VHLEESTGNS DCMEIDVESS VDGNCETLEH DYLAESSTCA NSLSLSKESG
301: QESWPLHRKK IRKVVVRRDK KARKKEENFE RALLIVNTRT SVDVAWQDGK IEGGLESTSL IPIESPGDHE FVAEQYVVEK AADDADDSND VRRVGVVKSV
401: NAKERTASVR WLKLVTRAED PKEFDKEEVV SVYELEGHPD YDYCYGDVVV RLLPVSLPAK VGSVLTSTEE SEHLLVPVEA KEDEQKHSKC NEAEAAPSDD
501: TCSQFSDLSW VGNITGLRNG DIEVTWADGM ISLVGPQAIY VVDRDDDESI VAGSDVGDDV ASWETVEDHE RETLGNVEEE LGTTNATDIS IEDEDGAMAT
601: EDSGRNGALS IPLAALGFVT RLASGIFSRG RKQTDSSSLD SRSEDEEREG TFAKIFTGDD SWSQRSGDLD NSPRLPAAGN AEDHDTMEVT DVIEANLTSE
701: MGNSSDQHDD QTYSFKRFDI TTDPYDHHFL GTSGQNNAGR KWLKKVQQDW NILQNNLPDG IYVRVYEDHM DLLRAVIVGA YGTPYQDGLF FFDFHLPPEY
801: PDVPPLAYYH SGGWRINPNL YEEGKVCLSL LNTWTGRGNE VWDSSSSSIL QVLVSLQGLV LNSRPYFNEA GYDKQVGTAE GEKNSLSYNE NTFLLNCKTM
901: MYLMRKPPKD FEELIREHFR MRGYYILKAC DAYMKGFLIG SLIKDASVSN NSSANSNSVG FKLMLAKIVP KLFLALKEIG VECEEYQHLH QL

Best Arabidopsis Sequence Match ( AT2G16920.1 )
(BLAST)

0001: MEHEQDDPGT STNVGVDSSV DDSMASLSIC DSEHPNIYRQ DIVKNKKTGS VGVVSEVAGD SDSDSDISDE EEDDDDDEDN DDDDEDVEEG KKASEENVVN
0101: GDGEKKADGN YKCGALEGDQ IRVLWMDNTE PVQDINDVTV IDRGFLHGDY VASASEPTGQ VGVVVDVNIS VDLLAPDGSI HKDISTKNLK RVRDFAVGDY
0201: VVHGPWLGRI DDVLDNVTVL FDDGSMCKVL RVEPLRLKPI PKNNLEEDAN FPYYPGQRVK ASSSSVFKNS RWLSGLWKPN RLEGTVTKVT AGSIFVYWIA
0301: SAGFGPDSSV SPPEEQNPSN LTLLSCFTHA NWQVGDWCLL PSLNQSATIP LHKHVSKLRL YDSQADRQQK IGRDLEDVQD EVSGKVEPAG ITAEALPKVT
0401: SDDPPQRNPS VSKEPVHEPW PLHRKKIRKL VIRKDKKVKK KEESFEQALL VVNSRTRVDV SWQDGTIECR REAITLIPIE TPGDHEFVSE QYVVEKTSDD
0501: GDNTTEPRRA GVVKNVNAKD RTASVRWLNP LRRAEEPREF EKEEIVSVYE LEGHPDYDYC YGDVVVRLSP IAVALPASSP GNSFEEATQQ DNGYQDSESH
0601: QEAKILVDKE ENEPSTDLSK LSWVGNITGL KDGDIEVTWA DGTISTVGPH AVYVVGRDDD DESVAGESET SDAASWETLN DDDRGAPEIP EEDLGRSSSI
0701: EGNSDADIYA ENDSGRNGAL ALPLAAIEFV TRLASGIFSR ARKSVDSSSS DYTVENVYKQ AESTNPSDET DSLDDPSPSK VNVTDNCESK GTQANAKNIL
0801: SGETSTFLED EDKPVPSEGD SCSFRRFDIS QDPLDHHFLG VDGQKTKERQ WFKKVDQDWK ILQNNLPDGI FVRAYEDRMD LLRAVIVGAF GTPYQDGLFF
0901: FDFHLPSDYP SVPPSAYYHS GGWRLNPNLY EEGKVCLSLL NTWTGRGNEV WDPKSSSILQ VLVSLQGLVL NSKPYFNEAG YDKQVGTAEG EKNSLGYNEN
1001: TFLLNCKTMM YLMRKPPKDF EELIKDHFRK RGYYILKACD AYMKGYLIGS LTKDASVIDE RSSANSTSVG FKLMLAKIAP KLFSALSEVG ADCNEFQHLQ
1101: QQ

Arabidopsis Description

UBC23Probable ubiquitin-conjugating enzyme E2 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.