Factsheet for Os01t0125900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 25047395
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G004520.2	Barley	nucleus	79.96	77.13
EES02568	Sorghum	nucleus	79.87	76.76
TraesCS3A01G047700.3	Wheat	nucleus	80.24	76.64
TraesCS3D01G032000.4	Wheat	nucleus	79.87	76.28
TraesCS3B01G034500.5	Wheat	nucleus	79.77	76.12
Zm00001d008520_P001	Maize	nucleus	78.46	75.68
Zm00001d040036_P022	Maize	nucleus	76.95	74.43
GSMUA_Achr1P26360_001	Banana	nucleus	55.22	59.53
CDX72600	Canola	cytosol	6.11	54.17
GSMUA_Achr8P34010_001	Banana	cytosol	47.98	49.8
Solyc01g111680.2.1	Tomato	nucleus	46.38	49.7
CDX89761	Canola	nucleus	46.94	47.66
KRG90672	Soybean	nucleus	50.05	47.33
Os05t0153132-00	Rice	cytosol	11.57	46.95
AT2G16920.1	Thale cress	nucleus	48.17	46.46
PGSC0003DMT400015781	Potato	nucleus	49.86	45.69
VIT_03s0038g02570.t01	Wine grape	nucleus	50.33	44.21
Os01t0677500-00	Rice	cytosol	13.73	42.32
CDY42703	Canola	cytosol, mitochondrion, nucleus	25.87	40.92
Bra017778.1-P	Field mustard	cytosol	33.49	39.78
CDY02226	Canola	endoplasmic reticulum, extracellular	44.21	38.78
Os05t0557700-01	Rice	cytosol	31.61	38.36
Bra013040.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	44.31	37.89
Os09t0294300-01	Rice	nucleus	14.58	35.8
Os05t0232500-01	Rice	nucleus, plastid	15.24	34.69
Os05t0557600-01	Rice	cytosol	16.56	34.58
Os01t0232500-01	Rice	nucleus	15.62	34.23
Os01t0229900-01	Rice	mitochondrion	8.47	33.09
Os01t0233900-01	Rice	mitochondrion	13.64	31.18
Os03t0679300-01	Rice	mitochondrion	4.05	25.9

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	EntrezGene:4326008	ProteinID:BAD52878.1	ProteinID:BAF03808.1	ProteinID:BAS70173.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625
GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135	EnsemblPlantsGene:Os01g0125900	EnsemblPlants:Os01t0125900-01	PFAM:PF00179
PFscan:PS50127	PANTHER:PTHR44422	PANTHER:PTHR44422:SF1	UniProt:Q5ZCB9	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0000446BA7	RefSeq:XP_015620154.1	SEG:seg	:

Description

UBIQUITIN-CONJUGATING ENZYME 34Ubiquitin-conjugating enzyme/RWD-like domain containing protein. (Os01t0125900-01)

Coordinates

chr1:+:1421693..1427650

Molecular Weight (calculated)

117141.0 Da

IEP (calculated)

4.257

GRAVY (calculated)

-0.553

Length

1063 amino acids

Sequence
(BLAST)

0001: MENLPNGSAN IAEKNQDNEM STDAGEPEEV ADIFIYREDV VSLKSKEDTR GLVLEVAGEY DSEGSITDDD TDTEEHEHKS SHRTENGGAD GDNVSNGVDV
0101: DSQSSLPDNK VRVLWIDGVE KTEDIDSVVV MDRSFLHGDI VASATDPTGQ MGLVADVSLV VDLQGPHGEI IKGVSSKDLR RIREFNVGDY VVSGPWLGRV
0201: DEVLDNVNVL FDDGSVCKVA RADPMRLRPA LGPLNPNASC PFYPGQRVKA VNSSVYKTSR WLNGLWKASR LEGTVTKVET VAVIVYWIAS AHFATNQESV
0301: PPEEQNPKDL TLLSCFSYAN WQLTDWCLPN QYTSSCTDDS LIESSEIKDS DDIPESSDVK TELTQKTDMD ENPGRMDGDS SADGSNMVYE DNTCLAKQSE
0401: SGTIASTVPK EGSQDNATYR KKLRKVFVKK DKRTRRRDES FERALLIANT YTKVDVIWQD GTKECGASST LLIPIHSPND HEFFPEQYVV DKVGNDVDDS
0501: SETKRVGLVR SVNAKDRTAS VSWFKPSLHP EEPREIECNE IVSAYELDGH PDYDYCYGDV VVRLPSVSLP VESTNRENTM ELDNVNSTEV SATPVADAEE
0601: QFPQKESSLE FTSLSWAGNI VGFEDGDIIV IWGDGSVSKV GPHEIYVVGR EDDGASLDDG TASDGASWET VDDNQTDLPD DSAQDDSQNV ADSNIERENG
0701: SFNSQDGSSV ATGPLSVAFG FVTRLASELF ARESGDDIDK AEGENNVATS ESTVVTTNDA SGGKSVDVDM ADKPGDSDGF KHFDVQQCPP DHHYLENMAQ
0801: GTGGRKWVKK VQQEWNILEK NLPDYIYVRV FEDRMDLIRA VIIGASGTPY QDGLFFFDFH LPPEFPQVPP SAYYHSGGLR VNPNLYVDGK VCLSLLNTWT
0901: GRGNEVWDPS SSSILQVLVS LQGLVLNEKP YFNEAGYEKQ VGTVEGEKNA LPYNENTYLL SLKSMLYILR RPPMHFEDFA KSHFSKRGKY ILKACEAYLQ
1001: GNGVGTLTDD ACTTERSKEQ PCSVGFKLAL AKIMPRLITA LKDAGANCDQ YEHLGKTETA QEH

Best Arabidopsis Sequence Match ( AT2G16920.1 )
(BLAST)

0001: MEHEQDDPGT STNVGVDSSV DDSMASLSIC DSEHPNIYRQ DIVKNKKTGS VGVVSEVAGD SDSDSDISDE EEDDDDDEDN DDDDEDVEEG KKASEENVVN
0101: GDGEKKADGN YKCGALEGDQ IRVLWMDNTE PVQDINDVTV IDRGFLHGDY VASASEPTGQ VGVVVDVNIS VDLLAPDGSI HKDISTKNLK RVRDFAVGDY
0201: VVHGPWLGRI DDVLDNVTVL FDDGSMCKVL RVEPLRLKPI PKNNLEEDAN FPYYPGQRVK ASSSSVFKNS RWLSGLWKPN RLEGTVTKVT AGSIFVYWIA
0301: SAGFGPDSSV SPPEEQNPSN LTLLSCFTHA NWQVGDWCLL PSLNQSATIP LHKHVSKLRL YDSQADRQQK IGRDLEDVQD EVSGKVEPAG ITAEALPKVT
0401: SDDPPQRNPS VSKEPVHEPW PLHRKKIRKL VIRKDKKVKK KEESFEQALL VVNSRTRVDV SWQDGTIECR REAITLIPIE TPGDHEFVSE QYVVEKTSDD
0501: GDNTTEPRRA GVVKNVNAKD RTASVRWLNP LRRAEEPREF EKEEIVSVYE LEGHPDYDYC YGDVVVRLSP IAVALPASSP GNSFEEATQQ DNGYQDSESH
0601: QEAKILVDKE ENEPSTDLSK LSWVGNITGL KDGDIEVTWA DGTISTVGPH AVYVVGRDDD DESVAGESET SDAASWETLN DDDRGAPEIP EEDLGRSSSI
0701: EGNSDADIYA ENDSGRNGAL ALPLAAIEFV TRLASGIFSR ARKSVDSSSS DYTVENVYKQ AESTNPSDET DSLDDPSPSK VNVTDNCESK GTQANAKNIL
0801: SGETSTFLED EDKPVPSEGD SCSFRRFDIS QDPLDHHFLG VDGQKTKERQ WFKKVDQDWK ILQNNLPDGI FVRAYEDRMD LLRAVIVGAF GTPYQDGLFF
0901: FDFHLPSDYP SVPPSAYYHS GGWRLNPNLY EEGKVCLSLL NTWTGRGNEV WDPKSSSILQ VLVSLQGLVL NSKPYFNEAG YDKQVGTAEG EKNSLGYNEN
1001: TFLLNCKTMM YLMRKPPKDF EELIKDHFRK RGYYILKACD AYMKGYLIGS LTKDASVIDE RSSANSTSVG FKLMLAKIAP KLFSALSEVG ADCNEFQHLQ
1101: QQ

Arabidopsis Description

UBC23Probable ubiquitin-conjugating enzyme E2 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.