CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017778.1-P	Field mustard	cytosol	89.58	67.26
CDX72600	Canola	cytosol	10.57	59.17
CDY30673	Canola	nucleus	13.84	51.38
CDY51802	Canola	cytosol	13.99	45.85
CDY25884	Canola	plastid	19.64	39.88
CDY25883	Canola	cytosol	16.67	39.58
CDX89761	Canola	nucleus	55.21	35.43
Solyc01g111680.2.1	Tomato	nucleus	47.92	32.46
CDX71178	Canola	cytosol	19.79	30.86
CDY55875	Canola	nucleus	19.49	30.68
KRG90672	Soybean	nucleus	49.7	29.72
CDX82439	Canola	cytosol	20.24	29.63
CDY02528	Canola	cytosol	20.83	29.17
CDY47562	Canola	cytosol	20.83	29.05
GSMUA_Achr1P26360_001	Banana	nucleus	42.26	28.8
CDY02226	Canola	endoplasmic reticulum, extracellular	51.93	28.8
CDX75824	Canola	cytosol	19.94	28.69
CDY24125	Canola	cytosol	20.39	28.19
PGSC0003DMT400015781	Potato	nucleus	48.51	28.1
VIT_03s0038g02570.t01	Wine grape	nucleus	50.6	28.1
CDY25886	Canola	cytosol	19.35	27.96
CDY53783	Canola	nucleus	34.23	27.15
CDY26018	Canola	cytosol	20.39	26.97
GSMUA_Achr8P34010_001	Banana	cytosol	40.92	26.86
CDX98552	Canola	cytosol	21.73	26.84
CDX97660	Canola	cytosol	21.88	26.63
CDY37693	Canola	nucleus	34.23	26.59
Os01t0125900-01	Rice	extracellular, plasma membrane	40.92	25.87
Zm00001d040036_P022	Maize	nucleus	41.37	25.3
HORVU3Hr1G004520.2	Barley	nucleus	41.07	25.05
Zm00001d008520_P001	Maize	nucleus	41.07	25.05
EES02568	Sorghum	nucleus	41.07	24.95
TraesCS3A01G047700.3	Wheat	nucleus	41.22	24.89
TraesCS3D01G032000.4	Wheat	nucleus	41.22	24.89
TraesCS3B01G034500.5	Wheat	nucleus	41.07	24.78
CDY20117	Canola	nucleus	21.13	23.75
CDY21838	Canola	cytosol	21.13	21.88

Protein Annotations

EnsemblPlants:CDY42703	EnsemblPlantsGene:GSBRNA2T00075235001	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44422	PANTHER:PTHR44422:SF1	PFAM:PF00179	PFscan:PS50127	ProteinID:CDY42703
ProteinID:CDY42703.1	SEG:seg	SMART:SM00212	SUPFAM:SSF54495	UniParc:UPI0004EE0611	UniProt:A0A078I0T9
MapMan:35.1	:	:	:	:	:

Description

BnaA03g53560DBnaA03g53560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0T9]

Coordinates

chrLK032532:-:98361..104409

Molecular Weight (calculated)

75673.4 Da

IEP (calculated)

5.583

GRAVY (calculated)

-0.474

Length

672 amino acids

Sequence
(BLAST)

001: MKAVTRTRRR RRRQRRLQEG ETKTLRRLRS FTKTIKLEKI SRSPRSRSRK SHDHRRLLSF TDVTFASSGR RWIMTLVQIQ WQVRLNLIPM WLPTAFIRII
101: EWQSPSVLTL LSSLIHTNFK VGDWCGTKDG SLGEALLIVH SRTRVDVAWQ DGSVECRREA TTLIPTETPV DDVFVAEQYV MEKAIVDDGN TTEPKRVGVV
201: KSLDAKERIA IVRWLKPLQR AEEPCQFESE ETASVYELER HPDHDYYTYG DVVVRLSPTE QGNDTKHLQQ DEVNAGLSWF GNITGLKDGG FEVTWADGIV
301: SKVGPGAVYV VEPDSDDGEP DAAGSGASSA SSWGTVDDDD SGAHEIPKED PSGEKDDPST QSFGATANPQ SEGSVLENKA LEGSKSGISD EPVTFKGDSY
401: IFRRFDISQE SLDHHYVSEE EQKIKEKVWV KKVHGDWKIL QDNLPDGIFV RVYEDRMDLL RAVIVGSYGT PYQDGLFLFD VFLPPKYPSE PPVVFYHSGG
501: WKLNPNLDED GNVCLSLLNT WKGRGSEVWD PQSSTILQVL VSIQGLVLNA KPYFNEADYD KLIGTVEGER RSLEYNEDAF LLNCKTMMHL MKKQPKGFEE
601: LVKEHFIKRG SHILKACNAY MEGYLIGSLT KDALIVDEPV FANSTSAGFR LSLEKLTAKL FPALSLLGAS DQ

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.