Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G032000.4 | Wheat | nucleus | 99.19 | 99.19 |
| TraesCS3B01G034500.5 | Wheat | nucleus | 98.65 | 98.56 |
| HORVU3Hr1G004520.2 | Barley | nucleus | 95.24 | 96.19 |
| Os01t0125900-01 | Rice | extracellular, plasma membrane | 76.64 | 80.24 |
| EES02568 | Sorghum | nucleus | 76.01 | 76.49 |
| Zm00001d008520_P001 | Maize | nucleus | 73.67 | 74.41 |
| Zm00001d040036_P022 | Maize | nucleus | 71.7 | 72.61 |
| TraesCS3A01G030200.1 | Wheat | endoplasmic reticulum | 11.23 | 58.14 |
| TraesCS2A01G441700.1 | Wheat | cytosol | 12.94 | 57.83 |
| GSMUA_Achr1P26360_001 | Banana | nucleus | 51.12 | 57.71 |
| CDX72600 | Canola | cytosol | 6.02 | 55.83 |
| Solyc01g111680.2.1 | Tomato | nucleus | 44.56 | 50.0 |
| GSMUA_Achr8P34010_001 | Banana | cytosol | 44.65 | 48.54 |
| CDX89761 | Canola | nucleus | 45.1 | 47.95 |
| KRG90672 | Soybean | nucleus | 48.16 | 47.69 |
| AT2G16920.1 | Thale cress | nucleus | 45.73 | 46.19 |
| PGSC0003DMT400015781 | Potato | nucleus | 47.71 | 45.78 |
| VIT_03s0038g02570.t01 | Wine grape | nucleus | 48.16 | 44.3 |
| CDY42703 | Canola | cytosol, mitochondrion, nucleus | 24.89 | 41.22 |
| TraesCS2A01G403400.1 | Wheat | cytosol | 35.22 | 39.56 |
| TraesCS1A01G388400.1 | Wheat | cytosol | 29.92 | 39.5 |
| Bra017778.1-P | Field mustard | cytosol | 31.72 | 39.44 |
| TraesCS3A01G157200.1 | Wheat | mitochondrion, nucleus, plastid | 13.12 | 39.04 |
| CDY02226 | Canola | endoplasmic reticulum, extracellular | 42.5 | 39.03 |
| Bra013040.1-P | Field mustard | cytosol, extracellular, mitochondrion, nucleus | 42.77 | 38.29 |
| TraesCS3A01G030400.1 | Wheat | plasma membrane | 33.06 | 36.91 |
| TraesCS3A01G157300.2 | Wheat | nucleus | 12.13 | 36.78 |
| TraesCS3A01G031600.1 | Wheat | cytosol | 32.7 | 36.51 |
| TraesCS2A01G586300.1 | Wheat | nucleus | 31.09 | 35.56 |
| TraesCS3A01G156300.1 | Wheat | nucleus, plastid | 13.3 | 32.6 |
| TraesCS3A01G269200.1 | Wheat | nucleus | 15.36 | 32.26 |
| TraesCS1A01G388000.1 | Wheat | cytosol, mitochondrion, nucleus | 15.9 | 31.55 |
| TraesCS1A01G129500.2 | Wheat | nucleus | 13.84 | 31.24 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G047700.3 | EnsemblPlantsGene:TraesCS3A01G047700 | Gene3D:3.10.110.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD |
| PANTHER:PTHR44422 | PANTHER:PTHR44422:SF1 | PFAM:PF00179 | PFscan:PS50127 | SEG:seg | SMART:SM00212 |
| SUPFAM:SSF54495 | TIGR:cd00195 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3A:-:25356301..25360841
Molecular Weight (calculated)
122621.0 Da
IEP (calculated)
4.254
GRAVY (calculated)
-0.536
Length
1113 amino acids
Sequence
(BLAST)
(BLAST)
0001: MENLLNVPEC IAEKNQENET SDDAGEPEEV ADVFVYREDV VSLKSNKDAR GLVMEVAGEY DSEGSITDDE SDAEENERKS AHKTENVGPD GDNANNASHG
0101: DDVDSQSSLP DNKVRVLWID GTEMTEDIDS VVVVDRTFLH GDMVASSSDP TGQMGLVADV SLVVDLQGAH GEMIKGVSAK DLRRIREFNV GDYVVSGLWL
0201: GRVDEVFDNV SVLFDDGSVC KVSRADPMRL RLASGPMHPD TACPFYPGQR VKAVSSSVYK TSRWLHGMWK ASRLEATVTK VETAAVIVYW IASAHCGTNQ
0301: DSVPPEEQNP KDLTLLSCFS YASWQLAEWC HPQPHTSSCA NDTLMECSKM KELNSEQADV PESAVDVQAE QAQNTKTDVN PLEKHGDSLA DRSNMSDGDN
0401: TCVAKDSESG TSVSTLPKEG VHDHATYRKK IRKVFVRKDK RAKRRDESFE SALLIADTYT KVDVLWQDGR KECGVSSTSL IPIQTPNDHE FFPEQYAVEK
0501: VSDDVDQPSE TRRVGLVRSV NAKDRTVSVS WFKSSLHSEE PREIECTEVV SAYELDGHPD YDYCYGDVVV RLPSVSHPME SSNGGNTMEL DKNVDSEEAS
0601: AASNAVPPDV AAEEQLSQKE SSSEVTHLSW VGNIVGFQDG EIEVTWGDGS VSKVGPHEIY VVGREDDGGS IDDGAPSDAG SWETVDDNEM DLPDDPANVL
0701: SAARMPFFWD DLQNAVQNSI EMENGSFNSQ DETSVGSGPL SVAFGFVTRL ASEIFARGKK HLDGSNSDAM DEVESQQSNE VSESGDDIDK NEDENRMAAS
0801: ESTTVTTNDS NAEKSVDVVM ADEPADSDCL KHFDVLQCPP DHHYLENIAH GTGGRKWVKK VQQEWGILEK NLPDYIYVRV FEDRMDLMRA VIIGASGTPY
0901: QDGLFFFDFY LPPEFPQAPP SAYYHSGGLR VNPNLYVDGK VCLSLLNTWT GRGNEVWDPS SSSILQVLVS LQGLVLNEKP YFNEAGYEKQ VGTVEGEKNA
1001: LPYNENTYLL SVKSMLYILR RPPMNFEDFV KSHFCKRGDY ILKACEAYLQ GAVVGTLNDD ACPTDTNKEY SCSMGFKLAL GKILPRLITA LKDIGADCSQ
1101: YEHLGKTETA QES
0101: DDVDSQSSLP DNKVRVLWID GTEMTEDIDS VVVVDRTFLH GDMVASSSDP TGQMGLVADV SLVVDLQGAH GEMIKGVSAK DLRRIREFNV GDYVVSGLWL
0201: GRVDEVFDNV SVLFDDGSVC KVSRADPMRL RLASGPMHPD TACPFYPGQR VKAVSSSVYK TSRWLHGMWK ASRLEATVTK VETAAVIVYW IASAHCGTNQ
0301: DSVPPEEQNP KDLTLLSCFS YASWQLAEWC HPQPHTSSCA NDTLMECSKM KELNSEQADV PESAVDVQAE QAQNTKTDVN PLEKHGDSLA DRSNMSDGDN
0401: TCVAKDSESG TSVSTLPKEG VHDHATYRKK IRKVFVRKDK RAKRRDESFE SALLIADTYT KVDVLWQDGR KECGVSSTSL IPIQTPNDHE FFPEQYAVEK
0501: VSDDVDQPSE TRRVGLVRSV NAKDRTVSVS WFKSSLHSEE PREIECTEVV SAYELDGHPD YDYCYGDVVV RLPSVSHPME SSNGGNTMEL DKNVDSEEAS
0601: AASNAVPPDV AAEEQLSQKE SSSEVTHLSW VGNIVGFQDG EIEVTWGDGS VSKVGPHEIY VVGREDDGGS IDDGAPSDAG SWETVDDNEM DLPDDPANVL
0701: SAARMPFFWD DLQNAVQNSI EMENGSFNSQ DETSVGSGPL SVAFGFVTRL ASEIFARGKK HLDGSNSDAM DEVESQQSNE VSESGDDIDK NEDENRMAAS
0801: ESTTVTTNDS NAEKSVDVVM ADEPADSDCL KHFDVLQCPP DHHYLENIAH GTGGRKWVKK VQQEWGILEK NLPDYIYVRV FEDRMDLMRA VIIGASGTPY
0901: QDGLFFFDFY LPPEFPQAPP SAYYHSGGLR VNPNLYVDGK VCLSLLNTWT GRGNEVWDPS SSSILQVLVS LQGLVLNEKP YFNEAGYEKQ VGTVEGEKNA
1001: LPYNENTYLL SVKSMLYILR RPPMNFEDFV KSHFCKRGDY ILKACEAYLQ GAVVGTLNDD ACPTDTNKEY SCSMGFKLAL GKILPRLITA LKDIGADCSQ
1101: YEHLGKTETA QES
0001: MEHEQDDPGT STNVGVDSSV DDSMASLSIC DSEHPNIYRQ DIVKNKKTGS VGVVSEVAGD SDSDSDISDE EEDDDDDEDN DDDDEDVEEG KKASEENVVN
0101: GDGEKKADGN YKCGALEGDQ IRVLWMDNTE PVQDINDVTV IDRGFLHGDY VASASEPTGQ VGVVVDVNIS VDLLAPDGSI HKDISTKNLK RVRDFAVGDY
0201: VVHGPWLGRI DDVLDNVTVL FDDGSMCKVL RVEPLRLKPI PKNNLEEDAN FPYYPGQRVK ASSSSVFKNS RWLSGLWKPN RLEGTVTKVT AGSIFVYWIA
0301: SAGFGPDSSV SPPEEQNPSN LTLLSCFTHA NWQVGDWCLL PSLNQSATIP LHKHVSKLRL YDSQADRQQK IGRDLEDVQD EVSGKVEPAG ITAEALPKVT
0401: SDDPPQRNPS VSKEPVHEPW PLHRKKIRKL VIRKDKKVKK KEESFEQALL VVNSRTRVDV SWQDGTIECR REAITLIPIE TPGDHEFVSE QYVVEKTSDD
0501: GDNTTEPRRA GVVKNVNAKD RTASVRWLNP LRRAEEPREF EKEEIVSVYE LEGHPDYDYC YGDVVVRLSP IAVALPASSP GNSFEEATQQ DNGYQDSESH
0601: QEAKILVDKE ENEPSTDLSK LSWVGNITGL KDGDIEVTWA DGTISTVGPH AVYVVGRDDD DESVAGESET SDAASWETLN DDDRGAPEIP EEDLGRSSSI
0701: EGNSDADIYA ENDSGRNGAL ALPLAAIEFV TRLASGIFSR ARKSVDSSSS DYTVENVYKQ AESTNPSDET DSLDDPSPSK VNVTDNCESK GTQANAKNIL
0801: SGETSTFLED EDKPVPSEGD SCSFRRFDIS QDPLDHHFLG VDGQKTKERQ WFKKVDQDWK ILQNNLPDGI FVRAYEDRMD LLRAVIVGAF GTPYQDGLFF
0901: FDFHLPSDYP SVPPSAYYHS GGWRLNPNLY EEGKVCLSLL NTWTGRGNEV WDPKSSSILQ VLVSLQGLVL NSKPYFNEAG YDKQVGTAEG EKNSLGYNEN
1001: TFLLNCKTMM YLMRKPPKDF EELIKDHFRK RGYYILKACD AYMKGYLIGS LTKDASVIDE RSSANSTSVG FKLMLAKIAP KLFSALSEVG ADCNEFQHLQ
1101: QQ
0101: GDGEKKADGN YKCGALEGDQ IRVLWMDNTE PVQDINDVTV IDRGFLHGDY VASASEPTGQ VGVVVDVNIS VDLLAPDGSI HKDISTKNLK RVRDFAVGDY
0201: VVHGPWLGRI DDVLDNVTVL FDDGSMCKVL RVEPLRLKPI PKNNLEEDAN FPYYPGQRVK ASSSSVFKNS RWLSGLWKPN RLEGTVTKVT AGSIFVYWIA
0301: SAGFGPDSSV SPPEEQNPSN LTLLSCFTHA NWQVGDWCLL PSLNQSATIP LHKHVSKLRL YDSQADRQQK IGRDLEDVQD EVSGKVEPAG ITAEALPKVT
0401: SDDPPQRNPS VSKEPVHEPW PLHRKKIRKL VIRKDKKVKK KEESFEQALL VVNSRTRVDV SWQDGTIECR REAITLIPIE TPGDHEFVSE QYVVEKTSDD
0501: GDNTTEPRRA GVVKNVNAKD RTASVRWLNP LRRAEEPREF EKEEIVSVYE LEGHPDYDYC YGDVVVRLSP IAVALPASSP GNSFEEATQQ DNGYQDSESH
0601: QEAKILVDKE ENEPSTDLSK LSWVGNITGL KDGDIEVTWA DGTISTVGPH AVYVVGRDDD DESVAGESET SDAASWETLN DDDRGAPEIP EEDLGRSSSI
0701: EGNSDADIYA ENDSGRNGAL ALPLAAIEFV TRLASGIFSR ARKSVDSSSS DYTVENVYKQ AESTNPSDET DSLDDPSPSK VNVTDNCESK GTQANAKNIL
0801: SGETSTFLED EDKPVPSEGD SCSFRRFDIS QDPLDHHFLG VDGQKTKERQ WFKKVDQDWK ILQNNLPDGI FVRAYEDRMD LLRAVIVGAF GTPYQDGLFF
0901: FDFHLPSDYP SVPPSAYYHS GGWRLNPNLY EEGKVCLSLL NTWTGRGNEV WDPKSSSILQ VLVSLQGLVL NSKPYFNEAG YDKQVGTAEG EKNSLGYNEN
1001: TFLLNCKTMM YLMRKPPKDF EELIKDHFRK RGYYILKACD AYMKGYLIGS LTKDASVIDE RSSANSTSVG FKLMLAKIAP KLFSALSEVG ADCNEFQHLQ
1101: QQ
Arabidopsis Description
UBC23Probable ubiquitin-conjugating enzyme E2 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.