CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30673	Canola	nucleus	25.83	17.13
CDY51802	Canola	cytosol	28.33	16.59
CDY25883	Canola	cytosol	30.83	13.07
CDY42703	Canola	cytosol, mitochondrion, nucleus	59.17	10.57
CDY25884	Canola	plastid	28.33	10.27
CDX82439	Canola	cytosol	32.5	8.5
CDY55875	Canola	nucleus	30.0	8.43
CDX71178	Canola	cytosol	29.17	8.12
CDY25886	Canola	cytosol	30.0	7.74
CDY24125	Canola	cytosol	30.83	7.61
CDX89761	Canola	nucleus	64.17	7.35
CDY02528	Canola	cytosol	29.17	7.29
CDY26018	Canola	cytosol	30.83	7.28
CDX75824	Canola	cytosol	28.33	7.28
CDY47562	Canola	cytosol	29.17	7.26
CDY53783	Canola	nucleus	50.83	7.2
CDX98552	Canola	cytosol	31.67	6.99
CDY37693	Canola	nucleus	50.0	6.94
CDX97660	Canola	cytosol	31.67	6.88
Solyc01g111680.2.1	Tomato	nucleus	55.83	6.75
GSMUA_Achr1P26360_001	Banana	nucleus	55.0	6.69
CDY20117	Canola	nucleus	33.33	6.69
GSMUA_Achr8P34010_001	Banana	cytosol	55.0	6.45
KRG90672	Soybean	nucleus	58.33	6.23
CDY21838	Canola	cytosol	33.33	6.16
Os01t0125900-01	Rice	extracellular, plasma membrane	54.17	6.11
HORVU3Hr1G004520.2	Barley	nucleus	55.83	6.08
Zm00001d008520_P001	Maize	nucleus	55.83	6.08
VIT_03s0038g02570.t01	Wine grape	nucleus	60.83	6.03
TraesCS3A01G047700.3	Wheat	nucleus	55.83	6.02
TraesCS3D01G032000.4	Wheat	nucleus	55.83	6.02
TraesCS3B01G034500.5	Wheat	nucleus	55.83	6.01
EES02568	Sorghum	nucleus	55.0	5.97
Zm00001d040036_P022	Maize	nucleus	54.17	5.91
PGSC0003DMT400015781	Potato	nucleus	56.67	5.86
CDY02226	Canola	endoplasmic reticulum, extracellular	43.33	4.29

Protein Annotations

EnsemblPlants:CDX72600	EnsemblPlantsGene:GSBRNA2T00100144001	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44422	PFAM:PF00179	PFscan:PS50127	ProteinID:CDX72600	ProteinID:CDX72600.1
SUPFAM:SSF54495	UniParc:UPI0004EC98E6	MapMan:35.1	:	:	:

Description

BnaC07g46220D

Coordinates

chrLK031796:-:2114152..2114618

Molecular Weight (calculated)

13466.0 Da

IEP (calculated)

8.423

GRAVY (calculated)

-0.407

Length

120 amino acids

Sequence
(BLAST)

001: MNGDTEQVQD SKDATVVDHR FSLGEYVFSA SEPTGQMRYY QSGGWKLNPN LYERGNICLS LLNTWQGRKS EVWNPKSSSI FQVLLSLQGL VLNAKPYYKS
101: LEKLTAKLFP ALSLLGASDQ

Best Arabidopsis Sequence Match ( AT2G16920.1 )
(BLAST)

0001: MEHEQDDPGT STNVGVDSSV DDSMASLSIC DSEHPNIYRQ DIVKNKKTGS VGVVSEVAGD SDSDSDISDE EEDDDDDEDN DDDDEDVEEG KKASEENVVN
0101: GDGEKKADGN YKCGALEGDQ IRVLWMDNTE PVQDINDVTV IDRGFLHGDY VASASEPTGQ VGVVVDVNIS VDLLAPDGSI HKDISTKNLK RVRDFAVGDY
0201: VVHGPWLGRI DDVLDNVTVL FDDGSMCKVL RVEPLRLKPI PKNNLEEDAN FPYYPGQRVK ASSSSVFKNS RWLSGLWKPN RLEGTVTKVT AGSIFVYWIA
0301: SAGFGPDSSV SPPEEQNPSN LTLLSCFTHA NWQVGDWCLL PSLNQSATIP LHKHVSKLRL YDSQADRQQK IGRDLEDVQD EVSGKVEPAG ITAEALPKVT
0401: SDDPPQRNPS VSKEPVHEPW PLHRKKIRKL VIRKDKKVKK KEESFEQALL VVNSRTRVDV SWQDGTIECR REAITLIPIE TPGDHEFVSE QYVVEKTSDD
0501: GDNTTEPRRA GVVKNVNAKD RTASVRWLNP LRRAEEPREF EKEEIVSVYE LEGHPDYDYC YGDVVVRLSP IAVALPASSP GNSFEEATQQ DNGYQDSESH
0601: QEAKILVDKE ENEPSTDLSK LSWVGNITGL KDGDIEVTWA DGTISTVGPH AVYVVGRDDD DESVAGESET SDAASWETLN DDDRGAPEIP EEDLGRSSSI
0701: EGNSDADIYA ENDSGRNGAL ALPLAAIEFV TRLASGIFSR ARKSVDSSSS DYTVENVYKQ AESTNPSDET DSLDDPSPSK VNVTDNCESK GTQANAKNIL
0801: SGETSTFLED EDKPVPSEGD SCSFRRFDIS QDPLDHHFLG VDGQKTKERQ WFKKVDQDWK ILQNNLPDGI FVRAYEDRMD LLRAVIVGAF GTPYQDGLFF
0901: FDFHLPSDYP SVPPSAYYHS GGWRLNPNLY EEGKVCLSLL NTWTGRGNEV WDPKSSSILQ VLVSLQGLVL NSKPYFNEAG YDKQVGTAEG EKNSLGYNEN
1001: TFLLNCKTMM YLMRKPPKDF EELIKDHFRK RGYYILKACD AYMKGYLIGS LTKDASVIDE RSSANSTSVG FKLMLAKIAP KLFSALSEVG ADCNEFQHLQ
1101: QQ

Arabidopsis Description

UBC23Probable ubiquitin-conjugating enzyme E2 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.