Factsheet for Bra013040.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
extracellular 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02226	Canola	endoplasmic reticulum, extracellular	95.49	97.94
CDX89761	Canola	nucleus	77.96	92.55
AT2G16920.1	Thale cress	nucleus	67.82	76.5
Solyc01g111680.2.1	Tomato	nucleus	46.66	58.47
KRG90672	Soybean	nucleus	50.52	55.87
VIT_03s0038g02570.t01	Wine grape	nucleus	52.86	54.3
PGSC0003DMT400015781	Potato	nucleus	50.6	54.22
Bra017778.1-P	Field mustard	cytosol	38.29	53.18
GSMUA_Achr1P26360_001	Banana	nucleus	39.5	49.8
Bra036393.1-P	Field mustard	cytosol, extracellular	3.06	44.71
Os01t0125900-01	Rice	extracellular, plasma membrane	37.89	44.31
GSMUA_Achr8P34010_001	Banana	cytosol	36.2	43.95
HORVU3Hr1G004520.2	Barley	nucleus	38.37	43.28
EES02568	Sorghum	nucleus	38.46	43.22
Zm00001d008520_P001	Maize	nucleus	38.29	43.19
Zm00001d040036_P022	Maize	nucleus	38.05	43.04
TraesCS3A01G047700.3	Wheat	nucleus	38.29	42.77
TraesCS3D01G032000.4	Wheat	nucleus	38.21	42.68
TraesCS3B01G034500.5	Wheat	nucleus	38.21	42.64
Bra021874.1-P	Field mustard	nucleus	25.74	36.99
Bra041020.1-P	Field mustard	plastid	9.41	35.56
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	9.25	35.38
Bra030965.1-P	Field mustard	nucleus	10.62	28.09
Bra040814.1-P	Field mustard	cytosol	9.9	26.45
Bra019007.1-P	Field mustard	cytosol	10.54	26.36
Bra001591.1-P	Field mustard	nucleus	10.94	25.23
Bra027252.1-P	Field mustard	cytosol	10.78	24.36
Bra021105.1-P	Field mustard	nucleus	11.1	23.12

Protein Annotations

Gene3D:3.10.110.10	Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra013040	EnsemblPlants:Bra013040.1	EnsemblPlants:Bra013040.1-P
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
InterPro:IPR000608	InterPro:IPR012677	InterPro:IPR016135	UniProt:M4D980	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00179
PFAM:PF15519	PFscan:PS50127	PANTHER:PTHR44422	PANTHER:PTHR44422:SF1	InterPro:RBM39_linker	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002540428	SEG:seg	:	:

Description

AT2G16920 (E=0.0) UBC23, PFU2 | UBC23 (UBIQUITIN-CONJUGATING ENZYME 23); small conjugating protein ligase/ ubiquitin-protein ligase

Coordinates

chrA03:-:20836505..20845140

Molecular Weight (calculated)

137970.0 Da

IEP (calculated)

4.384

GRAVY (calculated)

-0.616

Length

1243 amino acids

Sequence
(BLAST)

0001: MELMLVVVVP KKRDFVTALL IARRSCLLNT LQFARLEDAR NALNLNGQLE IAGRAIKNNG DLDDDDGQVL VSSFLKLANL SSKREHISSP RCSAISIGGS
0101: SRKRGFSAVV GIPAVVDPVG APSECLLLKN MFDPSTETEP EFDFDEHIKE DVKDECSKFG ELNHIFVDKN SIGFLSTCHL KMRKQQWECN VLSMMEHEQD
0201: DPGVDLPLDG SLESEPICDD PSRIDKADDS GSNEHPNIYR HDIVRNNKTG SIGVVSEVAG DSDSESDISD EENYGGDDED DDNDDDGAEE EGKKANEENV
0301: GRGEKNYKCG TLEGDQIRVL WMDDTEPVQD VNNVTVVDRG FLHGDYVASS SDPTGQVGVV VDVDMSVDLL ALDGSTHKDI STKELKRVRD FCVGDYVVHG
0401: PWLGRIDDVL DNVTVLFDDG SMCRVLRAEP LQLKPVSQSN LEEDANFPYY PGQRVKATSS SVFKSSRWLS GLWKPNRLEG TVTKVTAGSI FVYWIASAGF
0501: GPDSAVSPPE EQSPSNLTLL SSFTHANWQV GDWGLLPSVN QSATIPLHKH VSKLRLYDSQ AKRADREQNK SDLEDELSEE KSEPVGITAE ALPKETTVSS
0601: TSKEPAHEPW PLHRKKIRKL VIRKDKRVKK KEESFERALL IVNSRTLVDV AWQDGTVECR REATTLIPIE TPGDQEFVPE QYVVEKASDD DDNNTTEPKR
0701: VGVVKSVNAK ERTASVRWLK PRLTAEEPRE FDKEEIASVY ELEVHPDYDY CYGDVVVRLS PVTMALPASS EATEQDDGHQ DAEYHQEAKV HDKEENEVDT
0801: NIPELSWVGN ITGLKDGDIE VTWADGMVST VGPQAIYVVG RDDDESIAAE SEASDAASWE TVDDDNGGAP EEDLGRGSFL EENSDAGNNG ENDSGRNGAL
0901: ALPLAAVEFV TRMASGIFSR GQKAEDSSSS SLTDDNGLTN SSHERGSFLD DHSPTNFSAT DNCDLEGTVV ENEAVERSEG EKSEEPIPSE SDSCSFKRFD
1001: ISQDPLDHHY LGSDEQKTKE RRWFKKVDQD WKILQNNLPD GIFVRVYEDR MDLLRAVIAG AYGTPYQDGL FFFDFHLPSD YPSVPPSAHY HSGGWRLNPN
1101: LYEEGKGLVL NSKPYFNEAG YDKQIGTAEG EKNSLGYNEN AFLLNCKTMM YLMRRPPKDF EELIKDHFRK RGYYILKACD AYMKGYLIGS LSKDASVIDE
1201: SCSANSNSVG FKLMLAKIAP KLFSALSEVG ADCNEFKHLQ QQQ

Best Arabidopsis Sequence Match ( AT2G16920.1 )
(BLAST)

0001: MEHEQDDPGT STNVGVDSSV DDSMASLSIC DSEHPNIYRQ DIVKNKKTGS VGVVSEVAGD SDSDSDISDE EEDDDDDEDN DDDDEDVEEG KKASEENVVN
0101: GDGEKKADGN YKCGALEGDQ IRVLWMDNTE PVQDINDVTV IDRGFLHGDY VASASEPTGQ VGVVVDVNIS VDLLAPDGSI HKDISTKNLK RVRDFAVGDY
0201: VVHGPWLGRI DDVLDNVTVL FDDGSMCKVL RVEPLRLKPI PKNNLEEDAN FPYYPGQRVK ASSSSVFKNS RWLSGLWKPN RLEGTVTKVT AGSIFVYWIA
0301: SAGFGPDSSV SPPEEQNPSN LTLLSCFTHA NWQVGDWCLL PSLNQSATIP LHKHVSKLRL YDSQADRQQK IGRDLEDVQD EVSGKVEPAG ITAEALPKVT
0401: SDDPPQRNPS VSKEPVHEPW PLHRKKIRKL VIRKDKKVKK KEESFEQALL VVNSRTRVDV SWQDGTIECR REAITLIPIE TPGDHEFVSE QYVVEKTSDD
0501: GDNTTEPRRA GVVKNVNAKD RTASVRWLNP LRRAEEPREF EKEEIVSVYE LEGHPDYDYC YGDVVVRLSP IAVALPASSP GNSFEEATQQ DNGYQDSESH
0601: QEAKILVDKE ENEPSTDLSK LSWVGNITGL KDGDIEVTWA DGTISTVGPH AVYVVGRDDD DESVAGESET SDAASWETLN DDDRGAPEIP EEDLGRSSSI
0701: EGNSDADIYA ENDSGRNGAL ALPLAAIEFV TRLASGIFSR ARKSVDSSSS DYTVENVYKQ AESTNPSDET DSLDDPSPSK VNVTDNCESK GTQANAKNIL
0801: SGETSTFLED EDKPVPSEGD SCSFRRFDIS QDPLDHHFLG VDGQKTKERQ WFKKVDQDWK ILQNNLPDGI FVRAYEDRMD LLRAVIVGAF GTPYQDGLFF
0901: FDFHLPSDYP SVPPSAYYHS GGWRLNPNLY EEGKVCLSLL NTWTGRGNEV WDPKSSSILQ VLVSLQGLVL NSKPYFNEAG YDKQVGTAEG EKNSLGYNEN
1001: TFLLNCKTMM YLMRKPPKDF EELIKDHFRK RGYYILKACD AYMKGYLIGS LTKDASVIDE RSSANSTSVG FKLMLAKIAP KLFSALSEVG ADCNEFQHLQ
1101: QQ

Arabidopsis Description

UBC23Probable ubiquitin-conjugating enzyme E2 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.