Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42703 | Canola | cytosol, mitochondrion, nucleus | 67.26 | 89.58 |
| Bra036393.1-P | Field mustard | cytosol, extracellular | 4.8 | 50.59 |
| Solyc01g111680.2.1 | Tomato | nucleus | 45.59 | 41.13 |
| Bra041020.1-P | Field mustard | plastid | 14.75 | 40.12 |
| KRG90672 | Soybean | nucleus | 49.72 | 39.59 |
| Bra038095.1-P | Field mustard | cytosol, nucleus, peroxisome | 14.3 | 39.38 |
| Bra013040.1-P | Field mustard | cytosol, extracellular, mitochondrion, nucleus | 53.18 | 38.29 |
| GSMUA_Achr1P26360_001 | Banana | nucleus | 41.9 | 38.03 |
| VIT_03s0038g02570.t01 | Wine grape | nucleus | 50.73 | 37.52 |
| PGSC0003DMT400015781 | Potato | nucleus | 48.38 | 37.33 |
| GSMUA_Achr8P34010_001 | Banana | cytosol | 40.22 | 35.16 |
| Bra021874.1-P | Field mustard | nucleus | 32.51 | 33.64 |
| Os01t0125900-01 | Rice | extracellular, plasma membrane | 39.78 | 33.49 |
| Zm00001d008520_P001 | Maize | nucleus | 39.78 | 32.3 |
| Zm00001d040036_P022 | Maize | nucleus | 39.66 | 32.3 |
| EES02568 | Sorghum | nucleus | 39.89 | 32.28 |
| HORVU3Hr1G004520.2 | Barley | nucleus | 39.44 | 32.03 |
| TraesCS3A01G047700.3 | Wheat | nucleus | 39.44 | 31.72 |
| TraesCS3D01G032000.4 | Wheat | nucleus | 39.44 | 31.72 |
| TraesCS3B01G034500.5 | Wheat | nucleus | 39.33 | 31.6 |
| Bra030965.1-P | Field mustard | nucleus | 15.87 | 30.21 |
| Bra040814.1-P | Field mustard | cytosol | 14.97 | 28.82 |
| Bra019007.1-P | Field mustard | cytosol | 15.64 | 28.17 |
| Bra027252.1-P | Field mustard | cytosol | 16.54 | 26.91 |
| Bra001591.1-P | Field mustard | nucleus | 15.98 | 26.53 |
| Bra021105.1-P | Field mustard | nucleus | 15.98 | 23.95 |
Protein Annotations
| EnsemblPlants:Bra017778.1 | EnsemblPlants:Bra017778.1-P | EnsemblPlantsGene:Bra017778 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR44422 | PANTHER:PTHR44422:SF1 | PFAM:PF00179 | PFscan:PS50127 |
| SEG:seg | SMART:SM00212 | SUPFAM:SSF54495 | UniParc:UPI0002540C5B | UniProt:M4DMP3 | MapMan:35.1 |
Description
AT2G16920 (E=4e-122) UBC23, PFU2 | UBC23 (UBIQUITIN-CONJUGATING ENZYME 23); small conjugating protein ligase/ ubiquitin-protein ligase
Coordinates
chrA03:-:30392558..30398058
Molecular Weight (calculated)
99004.7 Da
IEP (calculated)
4.786
GRAVY (calculated)
-0.489
Length
895 amino acids
Sequence
(BLAST)
(BLAST)
001: MEETKTEAKT KAVTGGRDKD AKKAPELHED RDDHARENLT IKLEKISRSP SLALVYRRNL RFFWTTMDHD AGTDSVASEA KSDPNVVTNS LHTDKSEDLA
101: ATNDHHPNVY KDDIVKSNKT GGIGIAINRG GSTDPGNCQC RVRWMNGDIE KVQDAKAVTV ADRRFSLGGY VFSASEPTGQ VGLVADLNIS VDLLARDGTI
201: HKDISTKMLK RVRDFAVGDY VVHVTVPSLG RVDEARENVI VKFDDGSTRA FREVDPSRLE PIPENNFGVD ETFPYHIGQR VRATRLKKPN RSEGTVDSVT
301: AGPVFVKWLA SRGVGPDSSV PLVEWQSPSV LTLLSSLIHT NFKVGDWCGT KDGSLGEALL IVHSRTRVDV AWQDGSVECR REATTLIPTE TPVDDVFVAE
401: QYVMEKAIVD DGNTTEPKRV GVVKSLDAKE RIAIVRWLKP LQRAEEPCQF ESEETASVYE LERHPDHDYY TYGDVVVRLS PTEQGNDTKH LQQDEVNAGL
501: SWFGNITGLK DGGFEVTWAD GIVSKVGPGA VYVVEPDSDD GEPDAAGSGA SSDSSWGTVD DDDSGAHEIP KEDPSGEKDD PSTQSFGATA NPQSEGSVLE
601: NKALEGSKSG ISDEPVTFKG DSYSFRRFDI SQESLDHHYV SEEEQKIKEK VWVKKFHGDW KILQDNLPDG IFVRVYEDRM DLLRAVIVGS YGTPYQDGLF
701: IFDVFLPPKY PSEPPVVFYH SGGWKLNPNL DEDGNVCLSL LNTWKGRGSE VWDPQSSTIL QVLVSIQGLV LNAKPYFNEA DYDKLIGTVE GERRSLEYNE
801: DAFLLNCKTM MHLMKKQPKG FEELVKEHFI KRGSHILKAC NAYMEGYLIG SLTKDALIVD EPVFANSTSA GFRLSLEKLT AKLFPALSLL GASDQ
101: ATNDHHPNVY KDDIVKSNKT GGIGIAINRG GSTDPGNCQC RVRWMNGDIE KVQDAKAVTV ADRRFSLGGY VFSASEPTGQ VGLVADLNIS VDLLARDGTI
201: HKDISTKMLK RVRDFAVGDY VVHVTVPSLG RVDEARENVI VKFDDGSTRA FREVDPSRLE PIPENNFGVD ETFPYHIGQR VRATRLKKPN RSEGTVDSVT
301: AGPVFVKWLA SRGVGPDSSV PLVEWQSPSV LTLLSSLIHT NFKVGDWCGT KDGSLGEALL IVHSRTRVDV AWQDGSVECR REATTLIPTE TPVDDVFVAE
401: QYVMEKAIVD DGNTTEPKRV GVVKSLDAKE RIAIVRWLKP LQRAEEPCQF ESEETASVYE LERHPDHDYY TYGDVVVRLS PTEQGNDTKH LQQDEVNAGL
501: SWFGNITGLK DGGFEVTWAD GIVSKVGPGA VYVVEPDSDD GEPDAAGSGA SSDSSWGTVD DDDSGAHEIP KEDPSGEKDD PSTQSFGATA NPQSEGSVLE
601: NKALEGSKSG ISDEPVTFKG DSYSFRRFDI SQESLDHHYV SEEEQKIKEK VWVKKFHGDW KILQDNLPDG IFVRVYEDRM DLLRAVIVGS YGTPYQDGLF
701: IFDVFLPPKY PSEPPVVFYH SGGWKLNPNL DEDGNVCLSL LNTWKGRGSE VWDPQSSTIL QVLVSIQGLV LNAKPYFNEA DYDKLIGTVE GERRSLEYNE
801: DAFLLNCKTM MHLMKKQPKG FEELVKEHFI KRGSHILKAC NAYMEGYLIG SLTKDALIVD EPVFANSTSA GFRLSLEKLT AKLFPALSLL GASDQ
0001: MEHEQDDPGT STNVGVDSSV DDSMASLSIC DSEHPNIYRQ DIVKNKKTGS VGVVSEVAGD SDSDSDISDE EEDDDDDEDN DDDDEDVEEG KKASEENVVN
0101: GDGEKKADGN YKCGALEGDQ IRVLWMDNTE PVQDINDVTV IDRGFLHGDY VASASEPTGQ VGVVVDVNIS VDLLAPDGSI HKDISTKNLK RVRDFAVGDY
0201: VVHGPWLGRI DDVLDNVTVL FDDGSMCKVL RVEPLRLKPI PKNNLEEDAN FPYYPGQRVK ASSSSVFKNS RWLSGLWKPN RLEGTVTKVT AGSIFVYWIA
0301: SAGFGPDSSV SPPEEQNPSN LTLLSCFTHA NWQVGDWCLL PSLNQSATIP LHKHVSKLRL YDSQADRQQK IGRDLEDVQD EVSGKVEPAG ITAEALPKVT
0401: SDDPPQRNPS VSKEPVHEPW PLHRKKIRKL VIRKDKKVKK KEESFEQALL VVNSRTRVDV SWQDGTIECR REAITLIPIE TPGDHEFVSE QYVVEKTSDD
0501: GDNTTEPRRA GVVKNVNAKD RTASVRWLNP LRRAEEPREF EKEEIVSVYE LEGHPDYDYC YGDVVVRLSP IAVALPASSP GNSFEEATQQ DNGYQDSESH
0601: QEAKILVDKE ENEPSTDLSK LSWVGNITGL KDGDIEVTWA DGTISTVGPH AVYVVGRDDD DESVAGESET SDAASWETLN DDDRGAPEIP EEDLGRSSSI
0701: EGNSDADIYA ENDSGRNGAL ALPLAAIEFV TRLASGIFSR ARKSVDSSSS DYTVENVYKQ AESTNPSDET DSLDDPSPSK VNVTDNCESK GTQANAKNIL
0801: SGETSTFLED EDKPVPSEGD SCSFRRFDIS QDPLDHHFLG VDGQKTKERQ WFKKVDQDWK ILQNNLPDGI FVRAYEDRMD LLRAVIVGAF GTPYQDGLFF
0901: FDFHLPSDYP SVPPSAYYHS GGWRLNPNLY EEGKVCLSLL NTWTGRGNEV WDPKSSSILQ VLVSLQGLVL NSKPYFNEAG YDKQVGTAEG EKNSLGYNEN
1001: TFLLNCKTMM YLMRKPPKDF EELIKDHFRK RGYYILKACD AYMKGYLIGS LTKDASVIDE RSSANSTSVG FKLMLAKIAP KLFSALSEVG ADCNEFQHLQ
1101: QQ
0101: GDGEKKADGN YKCGALEGDQ IRVLWMDNTE PVQDINDVTV IDRGFLHGDY VASASEPTGQ VGVVVDVNIS VDLLAPDGSI HKDISTKNLK RVRDFAVGDY
0201: VVHGPWLGRI DDVLDNVTVL FDDGSMCKVL RVEPLRLKPI PKNNLEEDAN FPYYPGQRVK ASSSSVFKNS RWLSGLWKPN RLEGTVTKVT AGSIFVYWIA
0301: SAGFGPDSSV SPPEEQNPSN LTLLSCFTHA NWQVGDWCLL PSLNQSATIP LHKHVSKLRL YDSQADRQQK IGRDLEDVQD EVSGKVEPAG ITAEALPKVT
0401: SDDPPQRNPS VSKEPVHEPW PLHRKKIRKL VIRKDKKVKK KEESFEQALL VVNSRTRVDV SWQDGTIECR REAITLIPIE TPGDHEFVSE QYVVEKTSDD
0501: GDNTTEPRRA GVVKNVNAKD RTASVRWLNP LRRAEEPREF EKEEIVSVYE LEGHPDYDYC YGDVVVRLSP IAVALPASSP GNSFEEATQQ DNGYQDSESH
0601: QEAKILVDKE ENEPSTDLSK LSWVGNITGL KDGDIEVTWA DGTISTVGPH AVYVVGRDDD DESVAGESET SDAASWETLN DDDRGAPEIP EEDLGRSSSI
0701: EGNSDADIYA ENDSGRNGAL ALPLAAIEFV TRLASGIFSR ARKSVDSSSS DYTVENVYKQ AESTNPSDET DSLDDPSPSK VNVTDNCESK GTQANAKNIL
0801: SGETSTFLED EDKPVPSEGD SCSFRRFDIS QDPLDHHFLG VDGQKTKERQ WFKKVDQDWK ILQNNLPDGI FVRAYEDRMD LLRAVIVGAF GTPYQDGLFF
0901: FDFHLPSDYP SVPPSAYYHS GGWRLNPNLY EEGKVCLSLL NTWTGRGNEV WDPKSSSILQ VLVSLQGLVL NSKPYFNEAG YDKQVGTAEG EKNSLGYNEN
1001: TFLLNCKTMM YLMRKPPKDF EELIKDHFRK RGYYILKACD AYMKGYLIGS LTKDASVIDE RSSANSTSVG FKLMLAKIAP KLFSALSEVG ADCNEFQHLQ
1101: QQ
Arabidopsis Description
UBC23Probable ubiquitin-conjugating enzyme E2 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.