Factsheet for TraesCS6D01G399200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G492200.1	Wheat	cytosol	61.83	34.73
TraesCS6D01G399400.1	Wheat	cytosol	59.54	34.29
TraesCS7D01G086700.2	Wheat	cytosol	58.97	33.19
TraesCS6D01G369800.1	Wheat	cytosol, plasma membrane	32.63	32.33
TraesCS6D01G386900.1	Wheat	extracellular, plasma membrane	56.3	31.58
TraesCS6D01G386700.1	Wheat	cytosol	55.92	31.4
TraesCS5D01G557600.2	Wheat	cytosol	54.01	30.23
TraesCS1D01G019600.1	Wheat	cytosol	29.39	29.84
TraesCS6D01G398700.1	Wheat	plasma membrane	57.63	28.65
TraesCS5D01G032300.1	Wheat	cytosol	45.04	27.83
TraesCS2D01G545300.1	Wheat	cytosol	44.27	27.2
TraesCS6D01G076600.1	Wheat	cytosol	56.49	26.88
TraesCS1D01G045300.1	Wheat	cytosol	22.9	26.43
TraesCS7D01G409800.1	Wheat	cytosol	44.47	26.09
TraesCS5D01G547800.1	Wheat	cytosol	38.74	25.47
TraesCS5D01G098800.2	Wheat	plastid	42.94	24.67
TraesCS7D01G479900.1	Wheat	cytosol	22.14	24.37
TraesCS1D01G416200.1	Wheat	cytosol	20.42	23.57
TraesCS5D01G390500.1	Wheat	cytosol	41.22	22.93
TraesCS5D01G557500.1	Wheat	cytosol	41.22	22.86
TraesCS5D01G098700.1	Wheat	cytosol	41.03	22.63
TraesCS5D01G557700.1	Wheat	cytosol	40.65	22.44
TraesCS7D01G486400.1	Wheat	cytosol	39.12	22.21
TraesCS3D01G485300.2	Wheat	endoplasmic reticulum	39.5	22.09
TraesCS5D01G548400.1	Wheat	cytosol	39.69	22.03
TraesCS6D01G372800.1	Wheat	extracellular, plasma membrane	39.89	21.95
TraesCS5D01G554600.1	Wheat	cytosol	39.31	21.85
TraesCS5D01G098500.1	Wheat	cytosol, peroxisome, plasma membrane	39.69	21.71
TraesCS5D01G546600.1	Wheat	cytosol, golgi, plastid	38.36	21.5
TraesCS1D01G037400.1	Wheat	golgi, peroxisome	39.5	21.5
TraesCS2D01G585700.1	Wheat	cytosol	35.31	21.29
TraesCS1D01G037500.1	Wheat	cytosol, extracellular	38.74	21.28
TraesCS3D01G076100.1	Wheat	cytosol	38.55	21.22
TraesCS5D01G548200.1	Wheat	endoplasmic reticulum	38.17	21.05
TraesCS1D01G090600.1	Wheat	cytosol	38.93	20.92
TraesCS6D01G399500.1	Wheat	plastid	36.26	20.9
TraesCS5D01G548600.1	Wheat	extracellular, plasma membrane	39.31	20.89
TraesCS5D01G548300.1	Wheat	cytosol	37.6	20.76
TraesCS6D01G373000.2	Wheat	cytosol, mitochondrion	39.89	20.67
TraesCS7D01G116500.1	Wheat	golgi	38.36	20.28
TraesCS5D01G547200.1	Wheat	plastid	36.26	20.19
TraesCS7D01G540500.1	Wheat	cytosol	36.64	19.43
TraesCS7D01G479800.2	Wheat	cytosol	29.77	19.43
TraesCS2D01G487900.1	Wheat	extracellular, nucleus, peroxisome	35.5	18.71
TraesCS5D01G086400.1	Wheat	cytosol	19.47	18.18
TraesCS7D01G540600.1	Wheat	cytosol	16.22	17.0
TraesCS6D01G399100.1	Wheat	plasma membrane	57.06	15.06
TraesCS7D01G412600.1	Wheat	extracellular	12.6	14.7
TraesCS6D01G372900.1	Wheat	cytosol	9.54	13.48
TraesCS1D01G416300.1	Wheat	cytosol	7.63	11.87
TraesCS7D01G540000.1	Wheat	mitochondrion	1.15	3.05
TraesCS7D01G201200.1	Wheat	cytosol	0.0	0.0
TraesCS6D01G399700.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6D01G399200.1	EnsemblPlantsGene:TraesCS6D01G399200	Gene3D:1.10.10.10	Gene3D:3.80.10.10	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0043531	InterPro:IPR032675	InterPro:IPR036388	InterPro:LRR_dom_sf	InterPro:NB-ARC
InterPro:P-loop_NTPase	InterPro:WH-like_DNA-bd_sf	PANTHER:PTHR43889	PANTHER:PTHR43889:SF9	PFAM:PF00931	SEG:seg
SUPFAM:SSF52058	SUPFAM:SSF52540	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6D:-:469929933..469931507

Molecular Weight (calculated)

59880.8 Da

IEP (calculated)

8.794

GRAVY (calculated)

0.026

Length

524 amino acids

Sequence
(BLAST)

001: MRDVAESCRS SFRGHIYNIR PLNMMHAQQL FHGRLFNSKE DCPAHLKVVM DKILKKCDGL PLAIIAISGL LSNTETTVLL WNQVEISIGR ALERNSSVER
101: MMNILSLSYF DLPPHLKTCL LYLSIFPEDS IIEKKVVIRR WIVEGFIRKE GRYMVYELGE RCFNELIKRS LIQPVESDRY DRTMRFRVHD TILDFIISKS
201: VEENFVTFVG LPGIAAGTQR KVRRLSLQVG NQRKLLLPKD LILSHVRSLN VFADSMEIPS LDEFMHLRVL DFGGCCQLEN HHLVNIGRLF HLKYLNLRHL
301: GVSELPEQIK HLQYLDMLDL RDTNVRELPR AIVNLSSLVY LLVDNGVTFP GGVLKMQALE ILKQVEALGQ SLNFLQELGQ LKNLRKIYLD LFDVPVVGVT
401: KECSKSFIAY QSLCNLGTQN LRSVTIWHGG GFLLEPWYPA LRSLEKLITW RSAVPHVPEW VGSLVNLQKL RLEVESLGQP DLCILATLPA LLTLDLEKTT
501: KSSEGKLNVS GGDGFRFLRN LRII

Best Arabidopsis Sequence Match ( AT3G07040.1 )
(BLAST)

001: MASATVDFGI GRILSVLENE TLLLSGVHGE IDKMKKELLI MKSFLEDTHK HGGNGSTTTT TQLFQTFVAN TRDLAYQIED ILDEFGYHIH GYRSCAKIWR
101: AFHFPRYMWA RHSIAQKLGM VNVMIQSISD SMKRYYHSEN YQAALLPPID DGDAKWVNNI SESSLFFSEN SLVGIDAPKG KLIGRLLSPE PQRIVVAVVG
201: MGGSGKTTLS ANIFKSQSVR RHFESYAWVT ISKSYVIEDV FRTMIKEFYK EADTQIPAEL YSLGYRELVE KLVEYLQSKR YIVVLDDVWT TGLWREISIA
301: LPDGIYGSRV MMTTRDMNVA SFPYGIGSTK HEIELLKEDE AWVLFSNKAF PASLEQCRTQ NLEPIARKLV ERCQGLPLAI ASLGSMMSTK KFESEWKKVY
401: STLNWELNNN HELKIVRSIM FLSFNDLPYP LKRCFLYCSL FPVNYRMKRK RLIRMWMAQR FVEPIRGVKA EEVADSYLNE LVYRNMLQVI LWNPFGRPKA
501: FKMHDVIWEI ALSVSKLERF CDVYNDDSDG DDAAETMENY GSRHLCIQKE MTPDSIRATN LHSLLVCSSA KHKMELLPSL NLLRALDLED SSISKLPDCL
601: VTMFNLKYLN LSKTQVKELP KNFHKLVNLE TLNTKHSKIE ELPLGMWKLK KLRYLITFRR NEGHDSNWNY VLGTRVVPKI WQLKDLQVMD CFNAEDELIK
701: NLGCMTQLTR ISLVMVRREH GRDLCDSLNK IKRIRFLSLT SIDEEEPLEI DDLIATASIE KLFLAGKLER VPSWFNTLQN LTYLGLRGSQ LQENAILSIQ
801: TLPRLVWLSF YNAYMGPRLR FAQGFQNLKI LEIVQMKHLT EVVIEDGAMF ELQKLYVRAC RGLEYVPRGI ENLINLQELH LIHVSNQLVE RIRGEGSVDR
901: SRVKHIPAIK HYFRTDNGSF YVSLSS

Arabidopsis Description

RPM1Disease resistance protein RPM1 [Source:UniProtKB/Swiss-Prot;Acc:Q39214]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.