CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26270.1	CDX74635	AT5G35750.1	18642946
AT1G26270.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024724.1-P	Field mustard	plastid	99.84	97.9
CDX85013	Canola	mitochondrion	97.7	95.65
CDY36079	Canola	cytosol	88.16	86.73
CDY34563	Canola	cytosol	87.34	85.92
AT1G26270.1	Thale cress	cytosol	87.66	84.6
VIT_01s0010g00600.t01	Wine grape	cytosol	71.05	68.79
PGSC0003DMT400050546	Potato	cytosol	70.23	67.99
Solyc05g010810.1.1	Tomato	extracellular	71.55	67.97
Solyc04g005270.1.1	Tomato	cytosol	71.05	67.5
PGSC0003DMT400004869	Potato	cytosol	69.41	67.3
CDY48067	Canola	cytosol	66.94	66.07
CDX83526	Canola	cytosol	66.61	65.85
KRH71011	Soybean	cytosol	69.24	65.47
KRH75169	Soybean	cytosol	68.75	65.41
CDY56175	Canola	cytosol	62.17	61.87
Os04t0668700-01	Rice	cytosol, peroxisome, plastid	60.2	60.5
TraesCS2B01G570500.1	Wheat	peroxisome	58.06	57.12
Zm00001d026559_P001	Maize	plastid	58.22	57.0
EES13055	Sorghum	plastid	58.39	56.8
TraesCS2A01G540100.1	Wheat	peroxisome	58.22	56.01
TraesCS2D01G541800.1	Wheat	peroxisome	57.89	55.96
HORVU2Hr1G118320.7	Barley	mitochondrion, peroxisome, plastid	57.73	54.59
CDY14747	Canola	cytosol, peroxisome, plastid	34.21	42.36
CDY06957	Canola	cytosol, peroxisome, plastid	33.88	41.96
CDY35435	Canola	cytosol, extracellular, vacuole	34.05	39.13
CDY22484	Canola	cytosol, extracellular, vacuole	33.88	38.94
CDX72124	Canola	mitochondrion, peroxisome, plasma membrane, vacuole	35.69	38.61
CDX83360	Canola	cytosol	17.6	34.08
CDY27320	Canola	cytosol	25.0	31.08
CDY19844	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.36	30.47
CDY46532	Canola	cytosol	23.03	30.3
CDX87135	Canola	cytosol	23.19	30.26
CDY64881	Canola	cytosol	24.01	29.67
CDY08380	Canola	cytosol	25.0	29.17
CDY47844	Canola	plastid	25.0	29.12
CDY66313	Canola	cytosol	25.66	28.31
CDX89977	Canola	cytosol	13.98	27.33
CDX88085	Canola	cytosol	25.66	27.18
CDX95703	Canola	cytosol	21.88	26.81
CDX80424	Canola	cytosol	25.0	26.48
CDX90007	Canola	cytosol	8.72	23.56
CDY27202	Canola	plasma membrane	37.01	21.41

Protein Annotations

MapMan:27.5.2.3	GO:A0A078FT95	UniProt:A0A078FT95	EnsemblPlants:CDY16149	ProteinID:CDY16149	ProteinID:CDY16149.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00090586001	InterPro:IPR000403	PFAM:PF00454	InterPro:PI3/4_kinase_cat_dom
PANTHER:PTHR15245	PANTHER:PTHR15245:SF37	SUPFAM:SSF54236	UniParc:UPI0004EE5473	InterPro:Ubiquitin-like_domsf	SEG:seg

Description

BnaA09g28830DBnaA09g28830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT95]

Coordinates

chrLK032061:-:179556..182115

Molecular Weight (calculated)

67343.8 Da

IEP (calculated)

6.459

GRAVY (calculated)

-0.291

Length

608 amino acids

Sequence
(BLAST)

001: MSRKLNSPIQ TQMAVSLLKS PLTGEFHEFN KMGMKPPVGR RRVFVQTETG CVLGLELDRS DNAHTVKRKL QVALNFPTEE SSLTFGDLVL NNDLTSVRND
101: SPLLLTRNNF HRSSSTPCLS PMRADLQQGR DETSSIEILG NSVCSSFVRQ MAKDITKALK RGIDPVAVNS GLGGVYFFKN IRGDSVAIVK PTDEEPFAPN
201: NPKGFVGKAL GQPGLKRSVR VGETGYREVA AYLLDKDGFA NVPPTALVKI SHSIFNVNNG VKGSKRMEKV LVSKIASLQQ FISHDYDASE HGTSSFPVSA
301: VHRIGILDVR ILNTDRHSGN LLVRKLDGVG MFGQVELIPI DHGLCLPETL EDPYFEWIHW PQASIPFSED ELKYIANLDP FEDCEMLRRE LPMVREASLR
401: VLVLCTILLK EAAAYGLCLA EIGEMMTREV RAGDEEPSEI EVVCLEARSL IGEKEAESPR SDLGGDVEFQ FDLDCEENIT SPLGFTLGNA RCHLSKKEVN
501: EIAIPEKMGA VSKLSMSLKS TLLGEKSQKY QKHPGARAES GYASSGHRSA EEQIPASTSF VKLSDMSEEE WKIFLEKYQE LLYPAFAKRK AITLGQNLRQ
601: RLGTSCQF

Best Arabidopsis Sequence Match ( AT1G26270.1 )
(BLAST)

001: MSRKLDSPIK TQMAVALVKS PLNGEFREFN KVGMKTPVGR RRVFVQTETG CVLGLELDRS DNAHTVKRKL QVALNFPIEE SSLTFGDLVL KNDLTAVRSD
101: SPLLLTRNNF HRSSSTPCLS PMRADLQQRR DESSPIEILG NSVSFSFVRQ MAKDITKAVK KGIDPVAVNS GLGGAYYFKN SRGESVAIVK PTDEEPYAPN
201: NPKGFVGKAL GQPGLKRSVR VGETGYREVA AYLLDKEHFA NVPPTALVKI THSIFNVNDG VKASKPMEKM LVSKIASLQQ FIPHDYDASE HGTSNFPVSA
301: VHRIGILDIR ILNTDRHSGN LLVKKLDGDG MFGQVELVPI DHGLCLPETL EDPYFEWIHW PQASIPFSED ELKYIANLDP LGDCEMLRRE LPMVREASLR
401: VLVLCTIFLK EAAANGLCLA EIGEMMTREV RPGDEEPSEI EVVCLEAMSL IGEKDAESPR SDLGNDIEFQ FDIDCEEVTD CTKKLALPLG LTFGNARGQL
501: SKVEETTEDG EEEEEEDREE EENDRADLEK MPTIKLSMSL KSTLLGEKSQ KYQKHPGARV ESAYASSAHR SADEQIPSST SFVKLSDMSE EEWTIFLEKY
601: QELLYPAIEK RKSITLGQKQ RQRLGTSCQF

Arabidopsis Description

PI4KG5Phosphatidylinositol 4-kinase gamma 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C671]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.