CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome, mitochondrion, plasma membrane, plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
mitochondrion 2
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55908	Canola	plastid	92.64	84.8
AT5G01100.1	Thale cress	plastid	81.85	75.75
CDY10480	Canola	plastid	80.48	71.76
CDY40321	Canola	plastid	78.94	70.71
KRH65987	Soybean	cytosol	44.18	52.65
Os05t0451900-01	Rice	cytosol	37.5	52.14
OQU87869	Sorghum	mitochondrion	38.7	48.19
VIT_08s0007g01650.t01	Wine grape	plastid	49.83	47.09
CDX73509	Canola	plastid	51.88	47.05
CDX78207	Canola	plastid	51.88	46.98
KRH75793	Soybean	plastid	49.49	45.23
GSMUA_Achr5P28820_001	Banana	plastid	40.75	45.08
TraesCS3B01G397600.1	Wheat	plastid	41.78	44.36
TraesCS3D01G358900.2	Wheat	plastid	41.61	44.02
PGSC0003DMT400028801	Potato	plastid	48.29	43.99
Solyc09g011860.2.1	Tomato	plastid	48.46	43.94
PGSC0003DMT400052382	Potato	plastid	48.29	43.93
TraesCS3A01G365800.1	Wheat	plastid	41.78	43.88
HORVU1Hr1G073150.1	Barley	plastid	44.35	43.24
Zm00001d012362_P001	Maize	plastid	40.07	42.94
TraesCS1B01G288800.1	Wheat	plastid	44.18	42.72
TraesCS1A01G279800.1	Wheat	plastid	43.84	42.11
Solyc10g085050.1.1	Tomato	cytosol	43.32	41.96
Zm00001d038263_P001	Maize	plastid	40.92	41.71
KXG22127	Sorghum	plastid	43.32	41.41
CDY18412	Canola	plastid	50.51	40.97
TraesCS1D01G279000.1	Wheat	plastid	39.73	40.7
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plasma membrane, plastid	40.24	40.45
Zm00001d010112_P001	Maize	cytosol, plastid	39.73	40.14
CDX93336	Canola	plastid	49.83	40.03
CDY14499	Canola	plastid	49.14	39.97
CDY07758	Canola	plastid	48.97	39.83
CDY60465	Canola	mitochondrion	29.28	38.0
CDY43245	Canola	cytosol	29.28	38.0
CDX81230	Canola	mitochondrion	32.19	36.94
CDX74650	Canola	nucleus, plastid	40.24	36.78
CDY18704	Canola	mitochondrion	32.02	36.59
CDY33687	Canola	nucleus, plastid	40.24	36.55
Os01t0851100-02	Rice	plastid	26.37	35.98
CDX78650	Canola	golgi	30.31	34.84
CDX70647	Canola	golgi	29.97	34.52
CDX70637	Canola	golgi	30.14	34.51
CDY26456	Canola	golgi	29.79	34.25
CDX74265	Canola	cytosol, endoplasmic reticulum, golgi	30.14	34.24
CDX69504	Canola	golgi	29.79	34.18
CDX91985	Canola	golgi	29.97	34.05
CDY04145	Canola	cytosol	21.23	33.79
CDY24821	Canola	cytosol, endoplasmic reticulum, golgi	29.79	33.79
CDX96871	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	28.6	33.53
CDY62211	Canola	cytosol, endoplasmic reticulum, peroxisome, plastid	28.6	33.47
CDY34713	Canola	cytosol	25.17	31.55
CDY64492	Canola	cytosol, endoplasmic reticulum, golgi, plastid	25.68	31.51
CDY04814	Canola	golgi	29.97	31.47
CDY36425	Canola	cytosol, endoplasmic reticulum, plasma membrane	24.49	31.02
CDY34715	Canola	cytosol, endoplasmic reticulum, golgi	19.69	29.64
CDY53645	Canola	mitochondrion	24.49	26.98
CDY50845	Canola	cytosol, endoplasmic reticulum, golgi, plastid	24.49	26.88
CDX90501	Canola	mitochondrion	25.0	26.4
CDY32271	Canola	plastid	24.49	26.0
CDY31477	Canola	extracellular, golgi, plasma membrane	25.0	25.89
CDY29524	Canola	extracellular, golgi, plasma membrane	25.0	25.89
CDY60713	Canola	mitochondrion	24.49	25.86
CDY40517	Canola	mitochondrion	24.14	25.59
CDX73250	Canola	golgi	25.17	25.3
CDY64279	Canola	golgi	23.46	24.82
CDY54803	Canola	golgi	23.46	24.82
CDX87622	Canola	nucleus	23.8	24.73
CDY69289	Canola	cytosol	16.61	24.49
CDY39044	Canola	nucleus, plastid	5.14	22.06
CDY69490	Canola	nucleus, plastid	5.14	22.06
CDY68289	Canola	nucleus, plastid	5.14	22.06
CDY13557	Canola	nucleus, plastid	5.14	22.06
CDX85906	Canola	nucleus, plastid	5.14	22.06
CDX85735	Canola	nucleus, plastid	5.14	22.06
CDX78406	Canola	nucleus, plastid	5.14	22.06
CDX70375	Canola	nucleus, plastid	5.14	22.06
CDX69362	Canola	nucleus, plastid	5.14	22.06
CDX68121	Canola	nucleus, plastid	5.14	22.06

Protein Annotations

KEGG:00052+2.4.1.22	KEGG:00514+2.4.1.221	Gene3D:3.40.50.11350	MapMan:35.1	GO:A0A078IDG8	UniProt:A0A078IDG8
EnsemblPlants:CDY48112	ProteinID:CDY48112	ProteinID:CDY48112.1	InterPro:FucosylTrfase_pln	InterPro:GDP-Fuc_O-FucTrfase	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005975	GO:GO:0006004	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	EnsemblPlantsGene:GSBRNA2T00088810001	PFAM:PF10250
PIRSF:PIRSF009360	PANTHER:PTHR31741	PANTHER:PTHR31741:SF4	TMHMM:TMhelix	UniPathway:UPA00378	UniParc:UPI0004EEC189
SEG:seg	:	:	:	:	:

Description

BnaC02g03690DBnaC02g03690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDG8]

Coordinates

chrLK032754:-:92042..94537

Molecular Weight (calculated)

65306.9 Da

IEP (calculated)

8.309

GRAVY (calculated)

-0.363

Length

584 amino acids

Sequence
(BLAST)

001: MTVRVPVPPS SSQLPAAATT ATRRRVADSQ EDHCHVSTGG GGAVVYVPGD EEEATSSSGD GGGGGLSSCG QSDSHHNYLV RFLSLRKIRL VWMLMAENKS
101: QWTAAMARNV RSATNLGRMI LSLLGILVVT FFLVVALSGG GGVGRRGHVE KHEFVVSIHP RSNMEKIIKE EESSSSSVRV LLPERNPIPE IWNQPDTGNY
201: QKCVARSKNQ KPSKKTNGYL VVHANGGLNQ MRTGICDMVA IAKIMNAALV LPFLDHSSFW SDPSTFKDIF DWRHFIKVLA EDVDIFEYLP QEFASIKPLE
301: KNPKTLFSQA SYYRNSMTKQ NDEPFLALHL RYEKDMLAFT GCNHSLTSEE SIDLEEMRYS IPHWKEKVIN GTEQRLEGNC PMTPREAAVF LKAMGFPSTT
401: KIYIVAGKIY GQNSMNAFHQ EFPNVFFHST LATEEELSTI KPYQNRLAAL DYNLALESDV FAYTYDGNMA KAVQGHRRFE GFRKTINPDR YRTASCVMLS
501: FVNLIDRLDA GLMSWEDFSS EVKRINGKRL GAPYLRRPGK AGLSTKLEEN FYANPLPGCL CDTSEEPTGL NRFERPSLRA QALR

Best Arabidopsis Sequence Match ( AT5G01100.1 )
(BLAST)

001: MSVGVPVNPS SSSQLPAAPT TTTRRRVADS QEDHSHVNTV GGGNAVVYVP DEEETATSCC GGGGGGGSLS CCPSGSHHNY LVGFLSLRKF RLVWMLMVEN
101: KSKWTAGIAR NMRSTTNLGR FILTLLSILV VTFFLIVALS GGVGRRRKHV EKHEFVVSIH PRPTIEKIIR EDESSNSFQV LVPKTTSIPE IWNQPEVGNY
201: QKCVARPKNQ RPIKQTNGYL LVHANGGLNQ MRTGICDMVA IAKIMNATLV LPFLDHSSFW SDPSSFKDIF DWKHFIKVLA EDVNIVEYLP QEFASIKPLE
301: KNPVSWSKSS YYRNSISKLL KKHKVIVFNH TDSRLANNSP PPSIQRLRCR ANYEALRYSE DIENLSNVLS SRLRENNEPY LALHLRYEKD MLAFTGCNHS
401: LSNEESIDLE KMRFSIPHWK EKVINGTERR LEGNCPMTPR EAAVFLKAMG FPSTTNIYIV AGKIYGQNSM TAFHEEFPNV FFHNTLATEE ELSTIKPYQN
501: RLAALDYNLA LESDIFAYTY DGNMAKAVQG HRRFEGFRKT INPDRQRFVR LIDRLDAGLI SWEDFSSKVK KMHQHRIGAP YLRQPGKAGM SPKLEENFYA
601: NPLPGCVCDT SEEQTGLNRF ERPSLRAQSL R

Arabidopsis Description

FRB1FRB1 [Source:UniProtKB/TrEMBL;Acc:A0A178U817]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.