CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047025_P001	Maize	nucleus	88.85	88.51
Zm00001d030032_P002	Maize	nucleus	86.15	88.19
Os10t0574700-01	Rice	nucleus	72.69	74.41
TraesCS1B01G207700.1	Wheat	cytosol, mitochondrion, nucleus	73.08	73.93
TraesCS1A01G192800.1	Wheat	cytosol, mitochondrion, nucleus	73.08	70.37
TraesCS1D01G196400.1	Wheat	cytosol, mitochondrion, nucleus	71.92	70.3
KXG30975	Sorghum	nucleus	54.23	55.95
GSMUA_Achr4P19110_001	Banana	nucleus	55.0	55.86
EES12755	Sorghum	nucleus	52.31	54.18
HORVU1Hr1G050480.5	Barley	cytosol, nucleus	63.08	52.4
KRH13451	Soybean	cytosol	18.85	50.0
KXG25377	Sorghum	extracellular	36.92	45.5
OQU78879	Sorghum	endoplasmic reticulum	36.15	44.13
EES15787	Sorghum	endoplasmic reticulum	35.0	42.52
OQU76729	Sorghum	cytosol, plastid	40.0	40.62
KRH45433	Soybean	plastid	35.77	39.74
OQU84555	Sorghum	cytosol	20.0	39.39
EES04679	Sorghum	cytosol	25.77	34.9
KXG29686	Sorghum	cytosol	25.0	34.03
EER90181	Sorghum	cytosol	29.23	30.77
EES07500	Sorghum	nucleus	23.08	30.0
KXG29636	Sorghum	nucleus	27.31	29.96
EES04603	Sorghum	nucleus	28.85	29.07

Protein Annotations

EnsemblPlants:EER91885	EnsemblPlantsGene:SORBI_3001G288100	EntrezGene:8055146	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:DUF597	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31065	PANTHER:PTHR31065:SF13	PFAM:PF04640	ProteinID:EER91885	ProteinID:EER91885.1	RefSeq:XP_002464887.1
SEG:seg	unigene:Sbi.2195	UniParc:UPI0001A823D3	UniProt:C5WRB5	MapMan:15.5.43	:

Description

hypothetical protein

Coordinates

chr1:+:56440881..56444093

Molecular Weight (calculated)

28427.6 Da

IEP (calculated)

8.310

GRAVY (calculated)

-0.489

Length

260 amino acids

Sequence
(BLAST)

001: MAIDHDSPFK ELRLKNRRIM GGGGPDPEPE EEEEEAATAA YAEQWPRWLQ PLLSARFFAH CKTHSDSHRS GECNMFCLDC SSAAAGAGTR ALCSLCLAHG
101: HRDHHTIQIR RSSYHDVIRV SDIQRFMDIA GVQTYVINSA RVVFLNERPQ QQKPGCGGGG KAASASANLC EVCARSLLDN FRFCSLGCKV IGCSPDATKA
201: RNWLLKAGAD GDDSTSSSSA LRNADKKQSF TPPTPQPTLP TKRRKGIPHR APFGSLIVEY

Best Arabidopsis Sequence Match ( AT4G17900.1 )
(BLAST)

001: MAIEDQENTI REIKPKNRRI MGAGGPEEEE NRWPPWLKPL LKEQFFVHCK FHGDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG

Arabidopsis Description

At4g17900 [Source:UniProtKB/TrEMBL;Acc:Q0WUB8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.