CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92668
EES07862
EES09846
KXG22792

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51740.1	EER92668	AT1G27700.1	21798944
AT1G51740.1	EES07862	AT3G08780.1	21798944
AT1G51740.1	KXG22792	AT3G08780.1	21798944
AT1G51740.1	EES09846	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025915_P002	Maize	cytosol	95.9	96.2
HORVU2Hr1G091230.1	Barley	cytosol	89.91	89.91
TraesCS2D01G368900.1	Wheat	cytosol	89.27	89.27
TraesCS2B01G389700.1	Wheat	cytosol	89.27	89.27
TraesCS2A01G372700.1	Wheat	cytosol	89.27	89.27
Os04t0530400-01	Rice	cytosol	88.96	89.24
Os12t0154400-00	Rice	cytosol	88.96	89.24
OQU82137	Sorghum	cytosol	90.85	82.29
PGSC0003DMT400058087	Potato	cytosol	29.97	76.61
KRH04970	Soybean	cytosol	27.44	72.5
KRH48473	Soybean	cytosol	58.99	71.65
KRH39205	Soybean	cytosol	66.25	67.96
AT1G51740.1	Thale cress	cytosol	65.93	67.42
PGSC0003DMT400016313	Potato	cytosol	67.19	67.19
Solyc04g071730.2.1	Tomato	nucleus	66.88	66.88
Solyc03g033850.2.1	Tomato	mitochondrion	58.68	66.43
VIT_13s0019g03240.t01	Wine grape	cytosol	63.72	64.33
GSMUA_Achr11P...	Banana	cytosol	63.41	64.01

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.5	EntrezGene:8082877	UniProt:C5YCL0	ncoils:Coil	EnsemblPlants:EES11165
ProteinID:EES11165	ProteinID:EES11165.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0006810	GO:GO:0006888	GO:GO:0006890	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	GO:GO:0031201	PFAM:PF10496	PANTHER:PTHR15959	InterPro:SNARE
EnsemblPlantsGene:SORBI_3006G157400	SUPFAM:SSF47661	InterPro:Syntaxin-18_N	TMHMM:TMhelix	UniParc:UPI0001A86EC3	RefSeq:XP_002446837.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:51624747..51628375

Molecular Weight (calculated)

36561.8 Da

IEP (calculated)

7.879

GRAVY (calculated)

-0.462

Length

317 amino acids

Sequence
(BLAST)

001: MSRVRDRTED FKEAVRVAAL SHGYTEAQLA ALMSSFIIRK PSPKSAFTNA AIKTLESIRE LERFIVKHRR DYVDLHRTTE QERDNIEHEI GVFVKACKEQ
101: IDILKNRIHE EEKNGSGKTW LGTRDESSRL DLIAHQHGVV LILSERLHSV TAQFDRLRSM RFQDAINRAM PRKKILKRPE IKPAEPSKSN LVLKSDVSKI
201: VDQEVSPAPM RVQEQLLDDE TKALQVELTS LLDAVQETET KMIEMSALNH LMSTHVLQQA QQVQYLYDQA VEATNNVERG NKELSQAIQR NSSSRTFLLL
301: FFFVLTFSVL FLDWYNN

Best Arabidopsis Sequence Match ( AT1G51740.1 )
(BLAST)

001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS

Arabidopsis Description

SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.