Factsheet for PGSC0003DMT400016313

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400030171
PGSC0003DMT400036930
PGSC0003DMT400044093
PGSC0003DMT400055415

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51740.1	PGSC0003DMT400030171	AT1G27700.1	21798944
AT1G51740.1	PGSC0003DMT400055415	AT1G27700.1	21798944
AT1G51740.1	PGSC0003DMT400044093	AT3G08780.1	21798944
AT1G51740.1	PGSC0003DMT400036930	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g071730.2.1	Tomato	nucleus	97.79	97.79
PGSC0003DMT400058087	Potato	cytosol	35.96	91.94
KRH04970	Soybean	cytosol	30.28	80.0
KRH48473	Soybean	cytosol	63.09	76.63
KRH39205	Soybean	cytosol	72.56	74.43
AT1G51740.1	Thale cress	cytosol	70.98	72.58
VIT_13s0019g03240.t01	Wine grape	cytosol	71.61	72.29
Zm00001d025915_P002	Maize	cytosol	67.51	67.72
TraesCS2D01G368900.1	Wheat	cytosol	67.51	67.51
TraesCS2B01G389700.1	Wheat	cytosol	67.51	67.51
EES11165	Sorghum	cytosol	67.19	67.19
Zm00001d026122_P004	Maize	plasma membrane	67.19	67.19
TraesCS2A01G372700.1	Wheat	cytosol	67.19	67.19
Os04t0530400-01	Rice	cytosol	66.88	67.09
Os12t0154400-00	Rice	cytosol	66.56	66.77
HORVU2Hr1G091230.1	Barley	cytosol	66.56	66.56
GSMUA_Achr11P...	Banana	cytosol	65.93	66.56
OQU82137	Sorghum	cytosol	64.04	58.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400016313	EnsemblPlantsGene:PGSC0003DMG400006372	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:SNARE	InterPro:Syntaxin-18_N	ncoils:Coil
PANTHER:PTHR15959	PFAM:PF10496	PGSC:PGSC0003DMG400006372	SEG:seg	SUPFAM:SSF47661	TMHMM:TMhelix
UniParc:UPI00029566E7	UniProt:M1A7G0	MapMan:22.7.1.5	:	:	:

Description

Syntaxin-81 [Source:PGSC_GENE;Acc:PGSC0003DMG400006372]

Coordinates

chr4:+:60551213..60558696

Molecular Weight (calculated)

36050.7 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.496

Length

317 amino acids

Sequence
(BLAST)

001: MSKVRDRTED FKDVAHRSAL SLGYNESKTA ALLASFIMHK PRQRSGFTRA ALKTLESIGT LEQFLMKHKK DYVDLHRTTE QERDSIEHEV TIFVKSCKEQ
101: IDVLRNSINE EDANSKGWLG LKGDNLNADT IAHKHGVVLI LSEKLHSVTS QFDQLRAIRF QDAINRVTPR RKRKNTTKSN AAETSASSSL DPNMKRDFEG
201: LGDPDTQAAP IRVQEQLLDD ETRALQVELN SLLDSVQETE TKMVEMSALN HLMSTHVLQQ AQQIELLYDQ AVEATQNVEL GNKELSQAIQ RNSSSRTFLL
301: LFLFVLTFSI LFLDWYS

Best Arabidopsis Sequence Match ( AT1G51740.1 )
(BLAST)

001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS

Arabidopsis Description

SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.