Factsheet for Zm00001d026122_P004

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007394_P001
Zm00001d025308_P001
Zm00001d028054_P002
Zm00001d044621_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51740.1	Zm00001d028054_P002	AT1G27700.1	21798944
AT1G51740.1	Zm00001d025308_P001	AT3G08780.1	21798944
AT1G51740.1	Zm00001d044621_P001	AT3G08780.1	21798944
AT1G51740.1	Zm00001d007394_P001	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025915_P002	Maize	cytosol	94.01	94.3
HORVU2Hr1G091230.1	Barley	cytosol	89.27	89.27
TraesCS2D01G368900.1	Wheat	cytosol	88.64	88.64
TraesCS2B01G389700.1	Wheat	cytosol	88.64	88.64
TraesCS2A01G372700.1	Wheat	cytosol	88.64	88.64
Os04t0530400-01	Rice	cytosol	88.33	88.61
Os12t0154400-00	Rice	cytosol	88.33	88.61
OQU82137	Sorghum	cytosol	89.91	81.43
PGSC0003DMT400058087	Potato	cytosol	30.6	78.23
KRH04970	Soybean	cytosol	28.39	75.0
KRH48473	Soybean	cytosol	59.94	72.8
KRH39205	Soybean	cytosol	67.19	68.93
AT1G51740.1	Thale cress	cytosol	65.93	67.42
PGSC0003DMT400016313	Potato	cytosol	67.19	67.19
Solyc04g071730.2.1	Tomato	nucleus	66.88	66.88
Solyc03g033850.2.1	Tomato	mitochondrion	58.99	66.79
GSMUA_Achr11P...	Banana	cytosol	64.67	65.29
VIT_13s0019g03240.t01	Wine grape	cytosol	63.72	64.33

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100193453	MapMan:22.7.1.5	ProteinID:AQK45680.1	UniProt:B4FF30	EMBL:BT035718
ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	PFAM:PF10496	PANTHER:PTHR15959	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-18_N
TMHMM:TMhelix	UniParc:UPI00017B672B	EnsemblPlantsGene:Zm00001d026122	EnsemblPlants:Zm00001d026122_P004	EnsemblPlants:Zm00001d026122_T004	SEG:seg

Description

Syntaxin-81

Coordinates

chr10:+:138964009..138968030

Molecular Weight (calculated)

36562.8 Da

IEP (calculated)

8.943

GRAVY (calculated)

-0.479

Length

317 amino acids

Sequence
(BLAST)

001: MARVRDRTED FKEAVRVAAL SHGYTEAQLA ALMSSFIIRK PSPKSPFTNA AIKTLQSIRE LERFIVKHRR DYVDLHRSTE QERDNIEHEV GVFVKACKEQ
101: IDILKNRIHK EEKNGSGKTW LGTRDESSRV DLIAHQHGVV LILSERLHSV TAQFDHLRSI RFQDAINRAM PRKKIQKRPE IKPAEPSKSN LVLKSDVSKV
201: VDHEVSTTPM RVQEQLLDDE TKALQVELTS LLDAVQETET KMIEMSALNH LMSTHVLQQA QQIQYLYDQA VEATNNVERG NKELSQAIQR NSSSRTFLLL
301: FFFVLTFSIL FLDWYNN

Best Arabidopsis Sequence Match ( AT1G51740.1 )
(BLAST)

001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS

Arabidopsis Description

SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.