Factsheet for Solyc03g033850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g118130.2.1
Solyc04g078130.2.1
Solyc09g015180.2.1
Solyc12g088440.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51740.1	Solyc04g078130.2.1	AT1G27700.1	21798944
AT1G51740.1	Solyc12g088440.1.1	AT1G27700.1	21798944
AT1G51740.1	Solyc09g015180.2.1	AT3G08780.1	21798944
AT1G51740.1	Solyc03g118130.2.1	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058087	Potato	cytosol	42.86	96.77
Solyc04g071730.2.1	Tomato	nucleus	92.5	81.7
KRH04970	Soybean	cytosol	34.64	80.83
KRH48473	Soybean	cytosol	61.07	65.52
KRH39205	Soybean	cytosol	71.79	65.05
VIT_13s0019g03240.t01	Wine grape	cytosol	71.79	64.01
AT1G51740.1	Thale cress	cytosol	70.36	63.55
Zm00001d025915_P002	Maize	cytosol	67.14	59.49
Os04t0530400-01	Rice	cytosol	67.14	59.49
Os12t0154400-00	Rice	cytosol	66.79	59.18
Zm00001d026122_P004	Maize	plasma membrane	66.79	58.99
EES11165	Sorghum	cytosol	66.43	58.68
TraesCS2B01G389700.1	Wheat	cytosol	66.07	58.36
TraesCS2D01G368900.1	Wheat	cytosol	66.07	58.36
TraesCS2A01G372700.1	Wheat	cytosol	65.71	58.04
HORVU2Hr1G091230.1	Barley	cytosol	64.64	57.1
GSMUA_Achr11P...	Banana	cytosol	63.21	56.37
OQU82137	Sorghum	cytosol	63.93	51.14

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.5	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0006888	GO:GO:0006890	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0031201	UniProt:K4BFQ7	PFAM:PF10496
PANTHER:PTHR15959	InterPro:SNARE	SUPFAM:SSF47661	EnsemblPlantsGene:Solyc03g033850.2	EnsemblPlants:Solyc03g033850.2.1	InterPro:Syntaxin-18_N
TMHMM:TMhelix	UniParc:UPI0002767BA8	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:5452464..5458724

Molecular Weight (calculated)

31961.9 Da

IEP (calculated)

5.840

GRAVY (calculated)

-0.481

Length

280 amino acids

Sequence
(BLAST)

001: MHKPRQRLGF TRAAIKTLES IGTLEQFLMK HKKDYVDLHR TTEQERDSIE HEVTIFVKSC KEQIDVLRNS INEEDANSKG WLGLKGDNLN ADTIAHKHGV
101: VLILSEKLHS VTSQFDQLRA IRFQDAINRV TPRRNRKSTT KSNAAEASAS ISLDPDMKRD SEVRDNDVSQ AAPMRVQEQL LDDETRALQV ELNSLLDSVQ
201: ETETNMVEMS ALNHLMSTHV LQQAQQIELL YEQAVEATQN VELGNKELSQ AIQRNSSSRT FLLLFLVVLT FSILFLDWYS

Best Arabidopsis Sequence Match ( AT1G51740.1 )
(BLAST)

001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS

Arabidopsis Description

SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.