Factsheet for Os12t0154400-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0207200-01
Os04t0479300-01
Os07t0540200-01
Os10t0343100-01
Os11t0528500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51740.1	Os03t0207200-01	AT1G27700.1	21798944
AT1G51740.1	Os10t0343100-01	AT1G27700.1	21798944
AT1G51740.1	Os04t0479300-01	AT3G08780.1	21798944
AT1G51740.1	Os07t0540200-01	AT3G08780.1	21798944
AT1G51740.1	Os11t0528500-01	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0530400-01	Rice	cytosol	98.42	98.42
EES11165	Sorghum	cytosol	89.24	88.96
Zm00001d025915_P002	Maize	cytosol	88.92	88.92
HORVU2Hr1G091230.1	Barley	cytosol	88.92	88.64
TraesCS2D01G368900.1	Wheat	cytosol	88.92	88.64
TraesCS2B01G389700.1	Wheat	cytosol	88.92	88.64
TraesCS2A01G372700.1	Wheat	cytosol	88.92	88.64
Zm00001d026122_P004	Maize	plasma membrane	88.61	88.33
PGSC0003DMT400058087	Potato	cytosol	31.33	79.84
KRH04970	Soybean	cytosol	29.11	76.67
OQU82137	Sorghum	cytosol	84.18	76.0
KRH48473	Soybean	cytosol	60.13	72.8
KRH39205	Soybean	cytosol	67.72	69.26
AT1G51740.1	Thale cress	cytosol	66.77	68.06
Solyc03g033850.2.1	Tomato	mitochondrion	59.18	66.79
PGSC0003DMT400016313	Potato	cytosol	66.77	66.56
Solyc04g071730.2.1	Tomato	nucleus	66.46	66.25
GSMUA_Achr11P...	Banana	cytosol	64.87	65.29
VIT_13s0019g03240.t01	Wine grape	cytosol	64.56	64.97

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.5	EntrezGene:4351534	UniProt:B9GBY2	ProteinID:BAT15939.1	ncoils:Coil
ProteinID:EEE52789.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0006810	GO:GO:0006888	GO:GO:0006890	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	GO:GO:0031201	EnsemblPlantsGene:Os12g0154400	EnsemblPlants:Os12t0154400-00	PFAM:PF10496	PANTHER:PTHR15959
InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038	InterPro:Syntaxin-18_N	TMHMM:TMhelix	UniParc:UPI0000DD9DBD
RefSeq:XP_015620666.1	SEG:seg	:	:	:	:

Description

t-snare domain containing protein. (Os12t0154400-00)

Coordinates

chr12:+:2678088..2681517

Molecular Weight (calculated)

36494.8 Da

IEP (calculated)

8.929

GRAVY (calculated)

-0.502

Length

316 amino acids

Sequence
(BLAST)

001: MSRVRDRAED FKESVRVAAL GHGYTESQLA ALMSSFIIRK PPPKLPFTKA AIKTLESIRE LEKFIVKHRK DYVDMHRTTE QERDNIEHEV SVFVKACKEQ
101: IDILKNRIHE EKGGSTKTWL GTSDESSRLD LIAHQHGVVL ILSERLHSVT AQFDRLRTMR FQDAINRAMP RKRIQKKRET KAAEPSKPNL VLKSDVSKVE
201: DQEVSTAPLR VQEQLLDDET RALQVELTNL LDAVQETETK MIEMSALNHL MSTHVLQQAQ QIQYLYDQAV EATNNVERGN KELSQAIQRN SSSRTFLLLF
301: FFVLTFSVLF LDWYSK

Best Arabidopsis Sequence Match ( AT1G51740.1 )
(BLAST)

001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS

Arabidopsis Description

SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.