Factsheet for VIT_13s0019g03240.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0058g00530.t01
VIT_17s0000g00110.t01
VIT_18s0001g09380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51740.1	VIT_18s0001g09380.t01	AT1G27700.1	21798944
AT1G51740.1	VIT_08s0058g00530.t01	AT3G08780.1	21798944
AT1G51740.1	VIT_17s0000g00110.t01	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058087	Potato	cytosol	30.25	76.61
KRH48473	Soybean	cytosol	62.42	75.1
KRH39205	Soybean	cytosol	73.25	74.43
KRH04970	Soybean	cytosol	28.34	74.17
Solyc03g033850.2.1	Tomato	mitochondrion	64.01	71.79
PGSC0003DMT400016313	Potato	cytosol	72.29	71.61
Solyc04g071730.2.1	Tomato	nucleus	71.97	71.29
AT1G51740.1	Thale cress	cytosol	68.79	69.68
GSMUA_Achr11P...	Banana	cytosol	65.29	65.29
TraesCS2D01G368900.1	Wheat	cytosol	65.29	64.67
TraesCS2B01G389700.1	Wheat	cytosol	65.29	64.67
Os12t0154400-00	Rice	cytosol	64.97	64.56
TraesCS2A01G372700.1	Wheat	cytosol	64.97	64.35
Os04t0530400-01	Rice	cytosol	64.65	64.24
HORVU2Hr1G091230.1	Barley	cytosol	64.65	64.04
Zm00001d026122_P004	Maize	plasma membrane	64.33	63.72
EES11165	Sorghum	cytosol	64.33	63.72
Zm00001d025915_P002	Maize	cytosol	63.69	63.29
OQU82137	Sorghum	cytosol	63.06	56.57

Protein Annotations

MapMan:22.7.1.5	ProteinID:CCB56242	ProteinID:CCB56242.1	ncoils:Coil	UniProt:F6HNM3	EMBL:FN595998
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810
GO:GO:0006888	GO:GO:0006890	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0031201
PFAM:PF10496	PANTHER:PTHR15959	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-18_N	TIGR:TC66677
UniParc:UPI000210A74D	ArrayExpress:VIT_13s0019g03240	EnsemblPlantsGene:VIT_13s0019g03240	EnsemblPlants:VIT_13s0019g03240.t01	SEG:seg	:

Description

No Description!

Coordinates

chr13:+:4299892..4306208

Molecular Weight (calculated)

36012.0 Da

IEP (calculated)

5.827

GRAVY (calculated)

-0.489

Length

314 amino acids

Sequence
(BLAST)

001: MAKIRDRTED FKDVVRQTAL SLGYNESKMA SILSSFIIHK PLQRTSFTKA ALKTLESIRT LEQFIMQHRK DYVDMHRTTE QERDSIEHEV TIFIKACKDQ
101: IDILKNSISG EEANSRGWLG IRGDHSNADT IAHKHGVVLI LSERLHSVTA QFDQLRARRF QDAINRRIPR KKMNRVSSSN ATEIPKSINS ELREPDEPQP
201: EPLRVQQQLL DDETRALQVE LSSLLDAVQE TETQMVEMSA LNHLMSTHIL QQAQQIELLY EQAVEATSNV ELGNKELSQA IQRNSSSRTF LLLFLFEEPM
301: EMGCELIDLQ PAVF

Best Arabidopsis Sequence Match ( AT1G51740.1 )
(BLAST)

001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS

Arabidopsis Description

SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.