Factsheet for Os04t0530400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0207200-01
Os04t0479300-01
Os07t0540200-01
Os10t0343100-01
Os11t0528500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51740.1	Os03t0207200-01	AT1G27700.1	21798944
AT1G51740.1	Os10t0343100-01	AT1G27700.1	21798944
AT1G51740.1	Os04t0479300-01	AT3G08780.1	21798944
AT1G51740.1	Os07t0540200-01	AT3G08780.1	21798944
AT1G51740.1	Os11t0528500-01	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0154400-00	Rice	cytosol	98.42	98.42
EES11165	Sorghum	cytosol	89.24	88.96
Zm00001d025915_P002	Maize	cytosol	88.92	88.92
Zm00001d026122_P004	Maize	plasma membrane	88.61	88.33
HORVU2Hr1G091230.1	Barley	cytosol	88.29	88.01
TraesCS2A01G372700.1	Wheat	cytosol	88.29	88.01
TraesCS2B01G389700.1	Wheat	cytosol	88.29	88.01
TraesCS2D01G368900.1	Wheat	cytosol	88.29	88.01
PGSC0003DMT400058087	Potato	cytosol	31.33	79.84
KRH04970	Soybean	cytosol	29.11	76.67
OQU82137	Sorghum	cytosol	84.18	76.0
KRH48473	Soybean	cytosol	60.13	72.8
KRH39205	Soybean	cytosol	67.72	69.26
AT1G51740.1	Thale cress	cytosol	67.09	68.39
Solyc03g033850.2.1	Tomato	mitochondrion	59.49	67.14
PGSC0003DMT400016313	Potato	cytosol	67.09	66.88
Solyc04g071730.2.1	Tomato	nucleus	66.77	66.56
GSMUA_Achr11P...	Banana	cytosol	64.87	65.29
VIT_13s0019g03240.t01	Wine grape	cytosol	64.24	64.65

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.5	EntrezGene:4336482	EMBL:AK067634	ProteinID:BAF15303.1	ProteinID:BAS90207.1
ProteinID:CAD41209.2	ProteinID:CAE03862.2	ncoils:Coil	ProteinID:EEE61388.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0006888	GO:GO:0006890
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0031201	EnsemblPlantsGene:Os04g0530400
EnsemblPlants:Os04t0530400-01	PFAM:PF10496	PANTHER:PTHR15959	UniProt:Q7X7I8	InterPro:SNARE	SUPFAM:SSF47661
SUPFAM:SSF58038	InterPro:Syntaxin-18_N	TMHMM:TMhelix	UniParc:UPI000021C899	RefSeq:XP_015635852.1	SEG:seg

Description

t-snare domain containing protein. (Os04t0530400-01)

Coordinates

chr4:+:26528506..26531632

Molecular Weight (calculated)

36536.9 Da

IEP (calculated)

8.929

GRAVY (calculated)

-0.478

Length

316 amino acids

Sequence
(BLAST)

001: MSRVRDRTED FKESVRVAAL GHGYTESQLA VLMSSFIIRK PAPKLPFTKA AIKTLESIRE LEKFIVKHRK DYVDLHRTTE QERDNIEHEV SVFVKACKEQ
101: IDILKNRIHE EKGGSTKTWL GTSDESSRLD LIAHQHGVVL ILSERLHSVT VQFDRLRTMR FQDAINRAMP RKRIQKKRET KAAEPSKPNL VLKSDVSKVE
201: DQEVSTAPLR VQEQLLDDET RALQVELTNL LDAVQETETK MIEMSALNHL MSTHVLQQAQ QIQYLYDQAV EATNNVERGN KELSQAIQRN SSSRTFLLLF
301: FFVLTFSVLF LDWYSK

Best Arabidopsis Sequence Match ( AT1G51740.1 )
(BLAST)

001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS

Arabidopsis Description

SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.