CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05610
KRH41049
KRH52070
KRH54078
KRH59722
KRH61384
KRH63883
KRH65583
KRH76029

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51740.1	KRH05610	AT1G27700.1	21798944
AT1G51740.1	KRH52070	AT1G27700.1	21798944
AT1G51740.1	KRH61384	AT1G27700.1	21798944
AT1G51740.1	KRH65583	AT3G08780.1	21798944
AT1G51740.1	KRH76029	AT3G08780.1	21798944
AT1G51740.1	KRH41049	AT5G51010.1	21798944
AT1G51740.1	KRH54078	AT5G51010.1	21798944
AT1G51740.1	KRH59722	AT5G51010.1	21798944
AT1G51740.1	KRH63883	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48473	Soybean	cytosol	82.85	98.08
KRH04970	Soybean	cytosol	36.25	93.33
PGSC0003DMT400058087	Potato	cytosol	33.66	83.87
VIT_13s0019g03240.t01	Wine grape	cytosol	74.43	73.25
AT1G51740.1	Thale cress	cytosol	73.14	72.9
PGSC0003DMT400016313	Potato	cytosol	74.43	72.56
Solyc04g071730.2.1	Tomato	nucleus	73.79	71.92
Solyc03g033850.2.1	Tomato	mitochondrion	65.05	71.79
Os04t0530400-01	Rice	cytosol	69.26	67.72
Os12t0154400-00	Rice	cytosol	69.26	67.72
GSMUA_Achr11P...	Banana	cytosol	68.28	67.2
Zm00001d026122_P004	Maize	plasma membrane	68.93	67.19
Zm00001d025915_P002	Maize	cytosol	68.61	67.09
HORVU2Hr1G091230.1	Barley	cytosol	67.96	66.25
EES11165	Sorghum	cytosol	67.96	66.25
TraesCS2B01G389700.1	Wheat	cytosol	67.64	65.93
TraesCS2D01G368900.1	Wheat	cytosol	67.64	65.93
TraesCS2A01G372700.1	Wheat	cytosol	67.31	65.62
OQU82137	Sorghum	cytosol	65.37	57.71

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100778011	MapMan:22.7.1.5	EMBL:ACUP02005924	ncoils:Coil	EnsemblPlantsGene:GLYMA_09G184900
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810
GO:GO:0006888	GO:GO:0006890	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
GO:GO:0031201	UniProt:I1M2R5	EnsemblPlants:KRH39205	ProteinID:KRH39205	ProteinID:KRH39205.1	PFAM:PF10496
PANTHER:PTHR15959	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-18_N	TMHMM:TMhelix	UniParc:UPI000233B518
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:41001840..41005520

Molecular Weight (calculated)

35509.2 Da

IEP (calculated)

6.713

GRAVY (calculated)

-0.544

Length

309 amino acids

Sequence
(BLAST)

001: MGKARDRTED FKDAVRHTAR SLGYDEAKLA SVMASFIIHK PPQRSPFSKA ALKTLESIGE LDQFLLKHRK DYTDLHRTTE KERDSIEHEV STFIKTCQEQ
101: IDILKNSINQ EEETSKHWLG IATTKSNADT IAHKHGVVLI LSERLHSVTA QFDQLRAVRF QDAINKAIPR RKLNRVARKD SAETSKSGDM ELREPEELRS
201: EPLRVQQQLL DDETRALQVE LTSLLDTVQE TETKMVEMSA LNHLMSTHVL HQAQQIEHLY DQAVEATKNV ELGNKELSQA IQRNSSSRTF LLLFLFVLTF
301: SILFLDWYS

Best Arabidopsis Sequence Match ( AT1G51740.1 )
(BLAST)

001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS

Arabidopsis Description

SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.