Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH04970 | Soybean | cytosol | 42.15 | 91.67 |
| PGSC0003DMT400058087 | Potato | cytosol | 40.23 | 84.68 |
| KRH39205 | Soybean | cytosol | 98.08 | 82.85 |
| Solyc04g071730.2.1 | Tomato | nucleus | 76.63 | 63.09 |
| PGSC0003DMT400016313 | Potato | cytosol | 76.63 | 63.09 |
| VIT_13s0019g03240.t01 | Wine grape | cytosol | 75.1 | 62.42 |
| AT1G51740.1 | Thale cress | cytosol | 73.95 | 62.26 |
| Solyc03g033850.2.1 | Tomato | mitochondrion | 65.52 | 61.07 |
| GSMUA_Achr11P... | Banana | cytosol | 72.8 | 60.51 |
| Os04t0530400-01 | Rice | cytosol | 72.8 | 60.13 |
| Os12t0154400-00 | Rice | cytosol | 72.8 | 60.13 |
| Zm00001d026122_P004 | Maize | plasma membrane | 72.8 | 59.94 |
| Zm00001d025915_P002 | Maize | cytosol | 72.03 | 59.49 |
| HORVU2Hr1G091230.1 | Barley | cytosol | 72.03 | 59.31 |
| TraesCS2B01G389700.1 | Wheat | cytosol | 71.65 | 58.99 |
| TraesCS2D01G368900.1 | Wheat | cytosol | 71.65 | 58.99 |
| EES11165 | Sorghum | cytosol | 71.65 | 58.99 |
| TraesCS2A01G372700.1 | Wheat | cytosol | 71.26 | 58.68 |
| OQU82137 | Sorghum | cytosol | 68.58 | 51.14 |
Protein Annotations
| EMBL:ACUP02004240 | EMBL:ACUP02004241 | EnsemblPlants:KRH48473 | EnsemblPlantsGene:GLYMA_07G091000 | Gene3D:1.20.5.110 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:Syntaxin-18_N | PANTHER:PTHR15959 | PFAM:PF10496 | ProteinID:KRH48473 |
| ProteinID:KRH48473.1 | SEG:seg | SUPFAM:SSF58038 | TMHMM:TMhelix | UniParc:UPI0006EE01C4 | UniProt:A0A0R0J7I1 |
| MapMan:22.7.1.5 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:-:8516916..8521560
Molecular Weight (calculated)
30118.8 Da
IEP (calculated)
6.357
GRAVY (calculated)
-0.529
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKARDRTED FKDAVRHTAR SLGYDEAKLA SVMASFIIHK PPQKSPFSKA ALKTLESIGE LDQFLLKHRK DYTDLHRTTE KERDSIEHEV LILSERLHSV
101: TAQFDQLRAV RFQDAINKAI PRRKLNRVAR NDSAETSKSS DMELREPEEL RAEPLRVQQQ LLDDETRALQ VELTSLLDTV QETETKMVEM SALNHLMSTH
201: VLHQAQQIEH LYDQAVEATN NVELGNKELS QAIQRNSSSR TFLLLFLFVL TFSILFLDWY S
101: TAQFDQLRAV RFQDAINKAI PRRKLNRVAR NDSAETSKSS DMELREPEEL RAEPLRVQQQ LLDDETRALQ VELTSLLDTV QETETKMVEM SALNHLMSTH
201: VLHQAQQIEH LYDQAVEATN NVELGNKELS QAIQRNSSSR TFLLLFLFVL TFSILFLDWY S
001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS
Arabidopsis Description
SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.