Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G368900.1 | Wheat | cytosol | 99.37 | 99.37 |
| TraesCS2B01G389700.1 | Wheat | cytosol | 99.37 | 99.37 |
| HORVU2Hr1G091230.1 | Barley | cytosol | 97.48 | 97.48 |
| EES11165 | Sorghum | cytosol | 89.27 | 89.27 |
| Os12t0154400-00 | Rice | cytosol | 88.64 | 88.92 |
| Zm00001d026122_P004 | Maize | plasma membrane | 88.64 | 88.64 |
| Zm00001d025915_P002 | Maize | cytosol | 88.33 | 88.61 |
| Os04t0530400-01 | Rice | cytosol | 88.01 | 88.29 |
| PGSC0003DMT400058087 | Potato | cytosol | 30.28 | 77.42 |
| OQU82137 | Sorghum | cytosol | 84.54 | 76.57 |
| KRH04970 | Soybean | cytosol | 28.39 | 75.0 |
| KRH48473 | Soybean | cytosol | 58.68 | 71.26 |
| AT1G51740.1 | Thale cress | cytosol | 65.93 | 67.42 |
| KRH39205 | Soybean | cytosol | 65.62 | 67.31 |
| PGSC0003DMT400016313 | Potato | cytosol | 67.19 | 67.19 |
| Solyc04g071730.2.1 | Tomato | nucleus | 66.88 | 66.88 |
| Solyc03g033850.2.1 | Tomato | mitochondrion | 58.04 | 65.71 |
| VIT_13s0019g03240.t01 | Wine grape | cytosol | 64.35 | 64.97 |
| GSMUA_Achr11P... | Banana | cytosol | 63.41 | 64.01 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G372700.1 | EnsemblPlantsGene:TraesCS2A01G372700 | Gene3D:1.20.5.110 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016192 | InterPro:SNARE | InterPro:Syntaxin-18_N | ncoils:Coil | PANTHER:PTHR15959 |
| PFAM:PF10496 | SEG:seg | SUPFAM:SSF47661 | SUPFAM:SSF58038 | TMHMM:TMhelix | MapMan:22.7.1.5 |
Description
No Description!
Coordinates
chr2A:-:615345985..615349930
Molecular Weight (calculated)
37025.4 Da
IEP (calculated)
9.292
GRAVY (calculated)
-0.559
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRVRDRTED FKESVRVAAL SHGYTESQLA ALMSSFIIRK PSPKSPFTNA AIKTLESIRE LEKFIVKHRR DYVDMHRTTE QERDNIEHEV GIFVKACKEQ
101: IDILKNRILE DERNRRANTW LGTRDETSRL DLIAHQHGVV LILSERLHSV TAQFDRLRSL RFQEAINRVM PRKKIKKKPE IKPTEPSKSN LVLKSDVSKV
201: EDREVSTAPL RVQEQLLDDE TRALQMELTN LLDTVQETET KMIEMSALNH LMSTHVLQQA QQIQYLYDQA VEATNNVERG NKELSQAIQR NNSSRTFLLL
301: FFFVLTFSVL FLDWYKN
101: IDILKNRILE DERNRRANTW LGTRDETSRL DLIAHQHGVV LILSERLHSV TAQFDRLRSL RFQEAINRVM PRKKIKKKPE IKPTEPSKSN LVLKSDVSKV
201: EDREVSTAPL RVQEQLLDDE TRALQMELTN LLDTVQETET KMIEMSALNH LMSTHVLQQA QQIQYLYDQA VEATNNVERG NKELSQAIQR NNSSRTFLLL
301: FFFVLTFSVL FLDWYKN
001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS
Arabidopsis Description
SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.